HL_6GXM_039

3D structure

PDB id

6GXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAGAGAAUA

Length

9 nucleotides

Bulged bases

6GXM|1|A|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GXM_039 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.3207

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6GXM|1|A|U|1629
6GXM|1|A|A|1630
6GXM|1|A|G|1631
6GXM|1|A|A|1632
6GXM|1|A|G|1633
6GXM|1|A|A|1634
6GXM|1|A|A|1635
6GXM|1|A|U|1636
6GXM|1|A|A|1637

Current chains

Chain A

23S ribosomal RNA

Nearby chains