HL_6GXM_064

3D structure

PDB id

6GXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6GXM|1|A|G|2751, 6GXM|1|A|C|2755

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GXM_064 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.1574

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

6GXM|1|A|C|2745
6GXM|1|A|U|2746
6GXM|1|A|G|2747
6GXM|1|A|A|2748
6GXM|1|A|A|2749
6GXM|1|A|A|2750
6GXM|1|A|G|2751
6GXM|1|A|C|2752
6GXM|1|A|A|2753
6GXM|1|A|U|2754
6GXM|1|A|C|2755
6GXM|1|A|U|2756
6GXM|1|A|A|2757
6GXM|1|A|A|2758
6GXM|1|A|G|2759

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13