HL_6GXM_066

3D structure

PDB id

6GXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

6GXM|1|A|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GXM_066 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.1044

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6GXM|1|A|G|2819
6GXM|1|A|A|2820
6GXM|1|A|A|2821
6GXM|1|A|G|2822
6GXM|1|A|A|2823
6GXM|1|A|C|2824
6GXM|1|A|G|2825
6GXM|1|A|A|2826
6GXM|1|A|C|2827

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17