HL_6GXM_077

3D structure

PDB id

6GXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

6GXM|1|a|C|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GXM_077 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.2465

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6GXM|1|a|A|320
6GXM|1|a|A|321
6GXM|1|a|C|322
6GXM|1|a|U|323
6GXM|1|a|G|324
6GXM|1|a|A|325
6GXM|1|a|G|326
6GXM|1|a|A|327
6GXM|1|a|C|328
6GXM|1|a|A|329
6GXM|1|a|C|330
6GXM|1|a|G|331
6GXM|1|a|G|332
6GXM|1|a|U|333

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20