HL_6GXM_081

3D structure

PDB id

6GXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

6GXM|1|a|U|467

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GXM_081 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.208

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6GXM|1|a|G|462
6GXM|1|a|U|463
6GXM|1|a|U|464
6GXM|1|a|A|465
6GXM|1|a|A|466
6GXM|1|a|U|467
6GXM|1|a|A|468
6GXM|1|a|C|469
6GXM|1|a|C|470

Current chains

Chain a

16S ribosomal RNA

Nearby chains