HL_6GXM_101

3D structure

PDB id

6GXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

6GXM|1|x|C|16, 6GXM|1|x|G|19, 6GXM|1|x|G|20, 6GXM|1|x|U|21

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GXM_101 not in the Motif Atlas

Homologous match to HL_6JXM_001

Geometric discrepancy: 0.2002

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

6GXM|1|x|C|13
6GXM|1|x|A|14
6GXM|1|x|G|15
6GXM|1|x|C|16
6GXM|1|x|C|17
6GXM|1|x|U|18
6GXM|1|x|G|19
6GXM|1|x|G|20
6GXM|1|x|U|21
6GXM|1|x|A|22
6GXM|1|x|G|23

Current chains

Chain x

fMet-tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA