HL_6GXM_105

3D structure

PDB id

6GXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUAGG

Length

6 nucleotides

Bulged bases

6GXM|1|A|A|547

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GXM_105 not in the Motif Atlas

Geometric match to HL_8GLP_112

Geometric discrepancy: 0.344

The information below is about HL_8GLP_112

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36488.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6GXM|1|A|C|544
6GXM|1|A|U|545
6GXM|1|A|U|546
6GXM|1|A|A|547
6GXM|1|A|G|548
6GXM|1|A|G|549

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L13