3D structure

PDB id
6GXN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GCGACGGUUGUC
Length
12 nucleotides
Bulged bases
6GXN|1|A|A|1453, 6GXN|1|A|C|1454, 6GXN|1|A|U|1460
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6GXN_034 not in the Motif Atlas
Geometric match to HL_5J7L_018
Geometric discrepancy: 0.2958
The information below is about HL_5J7L_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_37344.1
Basepair signature
cWW-F-F
Number of instances in this motif group
2

Unit IDs

6GXN|1|A|G|1450
6GXN|1|A|C|1451
6GXN|1|A|G|1452
6GXN|1|A|A|1453
6GXN|1|A|C|1454
6GXN|1|A|G|1455
6GXN|1|A|G|1456
6GXN|1|A|U|1457
6GXN|1|A|U|1458
6GXN|1|A|G|1459
6GXN|1|A|U|1460
6GXN|1|A|C|1461

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain N
50S ribosomal protein L17

Coloring options:


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