RNA 3D Hub //

6GXN Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6GXN_0031/A/123:128No text annotation
homologous
HL_4WF9_003
HL_75660.7
HL_6GXN_1131/A/382:392No text annotation
homologous
HL_5J7L_145
NA
HL_6GXN_0131/A/462:467GNRA
homologous
HL_4WF9_015
HL_34789.2
HL_6GXN_0161/A/566:575T-loop with 2 stacked bulged bases
homologous
HL_7A0S_018
HL_33597.2
HL_6GXN_0211/A/744:753No text annotation
homologous
HL_4WF9_023
HL_50204.1
HL_6GXN_0221/A/779:785UNCG variation
geometric
HL_1P6V_001
NA
HL_6GXN_0231/A/826:831No text annotation
homologous
HL_7A0S_024
HL_27530.1
HL_6GXN_0251/A/954:963tRNA anticodon loop
geometric
HL_3RG5_006
HL_87268.1
HL_6GXN_0291/A/1222:1227GNRA
homologous
HL_7A0S_031
HL_34789.2
HL_6GXN_0301/A/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_5J7L_165
NA
HL_6GXN_0311/A/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
NA
HL_6GXN_0321/A/1363:1368GNRA
homologous
HL_5J7L_167
NA
HL_6GXN_0381/A/1612:1619No text annotation
homologous
HL_7RQB_040
NA
HL_6GXN_1091/A/1630:1636GNRA
homologous
HL_5J7L_174
NA
HL_6GXN_0421/A/1752:1756No text annotation
homologous
HL_5J7L_177
NA
HL_6GXN_0431/A/1777:1787No text annotation
homologous
HL_4WF9_043
HL_87681.1
HL_6GXN_0441/A/1806:1811GNRA related
homologous
HL_5J7L_179
NA
HL_6GXN_0461/A/1910:1920No text annotation
geometric
HL_5TBW_049
NA
HL_6GXN_1101/A/1950:1956No text annotation
HL_6GXN_0481/A/2027:2036No text annotation
homologous
HL_4WF9_047
HL_78372.1
HL_6GXN_0501/A/2209:2215No text annotation
homologous
HL_5J7L_185
NA
HL_6GXN_0511/A/2248:2256No text annotation
homologous
HL_7A0S_052
HL_11974.2
HL_6GXN_0521/A/2264:2276No text annotation
homologous
HL_5J7L_187
NA
HL_6GXN_0541/A/2324:2331Pseudoknot geometry
homologous
HL_5J7L_189
NA
HL_6GXN_0551/A/2356:2361GNRA
homologous
HL_5J7L_190
NA
HL_6GXN_0561/A/2374:2379GNRA
homologous
HL_4WF9_054
HL_34789.2
HL_6GXN_0591/A/2528:2535GNRA variation
homologous
HL_5J7L_194
NA
HL_6GXN_0601/A/2551:2557No text annotation
homologous
HL_4WF9_058
HL_48677.1
HL_6GXN_0631/A/2701:2706Ribsomal LSU H95
homologous
HL_7A0S_064
HL_12125.2
HL_6GXN_0691/B/86:90Mini UNCG
homologous
HL_5J7L_204
NA
HL_6GXN_0701/a/12:22No text annotation
homologous
HL_4LFB_001
HL_73535.1
HL_6GXN_0761/a/296:301GNRA
homologous
HL_5J7L_007
NA
HL_6GXN_0771/a/320:333No text annotation
homologous
HL_6CZR_079
NA
HL_6GXN_0831/a/617:623GNRA-like with tWH
homologous
HL_4LFB_014
HL_86621.1
HL_6GXN_0841/a/689:698No text annotation
homologous
HL_4LFB_015
HL_38491.2
HL_6GXN_0851/a/726:731GNRA
homologous
HL_5J7L_016
NA
HL_6GXN_0881/a/862:867GNRA
homologous
HL_5J7L_019
NA
HL_6GXN_0891/a/897:902GNRA
homologous
HL_4LFB_020
HL_34789.2
HL_6GXN_0901/a/963:972No text annotation
homologous
HL_5J7L_021
NA
HL_6GXN_0931/a/1089:1096T-loop related
homologous
HL_4LFB_025
HL_63894.2
HL_6GXN_1001/a/1515:1520GNRA
homologous
HL_4LFB_032
HL_34789.2
HL_6GXN_1021/x/32:40tRNA anticodon loop
homologous
HL_6CFJ_107
HL_81376.2

Problematic loops

#loop idProblemSequence
HL_6GXN_001No text annotation
HL_6GXN_002No text annotation
HL_6GXN_004No text annotation
HL_6GXN_005No text annotation
HL_6GXN_104No text annotation
HL_6GXN_006No text annotation
HL_6GXN_007No text annotation
HL_6GXN_008No text annotation
HL_6GXN_009T-loop with 2 stacked bulged bases
HL_6GXN_010T-loop with unstacked turn
HL_6GXN_011No text annotation
HL_6GXN_012Pseudoknot geometry
HL_6GXN_014GNRA
HL_6GXN_105No text annotation
HL_6GXN_015No text annotation
HL_6GXN_017No text annotation
HL_6GXN_018GNRA
HL_6GXN_019No text annotation
HL_6GXN_106No text annotation
HL_6GXN_020GNRA wlth tandem sheared
HL_6GXN_024No text annotation
HL_6GXN_026No text annotation
HL_6GXN_027No text annotation
HL_6GXN_028No text annotation
HL_6GXN_107No text annotation
HL_6GXN_033No text annotation
HL_6GXN_034No text annotation
HL_6GXN_035Pseudoknot geometry with 3' bulge
HL_6GXN_108No text annotation
HL_6GXN_036No text annotation
HL_6GXN_037Mini UNCG
HL_6GXN_039GNRA with extra cWW
HL_6GXN_040UNCG
HL_6GXN_041No text annotation
HL_6GXN_045GNRA variation
HL_6GXN_047No text annotation
HL_6GXN_049No text annotation
HL_6GXN_053No text annotation
HL_6GXN_114No text annotation
HL_6GXN_057No text annotation
HL_6GXN_058No text annotation
HL_6GXN_061GNRA
HL_6GXN_062GNRA
HL_6GXN_064No text annotation
HL_6GXN_065UNCG variation
HL_6GXN_066No text annotation
HL_6GXN_067GNRA
HL_6GXN_068No text annotation
HL_6GXN_071No text annotation
HL_6GXN_072GNRA with extra near cWW
HL_6GXN_111GNRA
HL_6GXN_073GNRA
HL_6GXN_074No text annotation
HL_6GXN_075GNRA related
HL_6GXN_078UNCG
HL_6GXN_112tRNA anticodon loop
HL_6GXN_079GNRA
HL_6GXN_080UNCG
HL_6GXN_081GNRA wlth extra near cWW
HL_6GXN_082No text annotation
HL_6GXN_086No text annotation
HL_6GXN_087No text annotation
HL_6GXN_091GNRA
HL_6GXN_092GNRA
HL_6GXN_094No text annotation
HL_6GXN_115No text annotation
HL_6GXN_095GNRA
HL_6GXN_096GNRA
HL_6GXN_097T-loop with 3 stacked bulged bases
HL_6GXN_098No text annotation
HL_6GXN_099UNCG
HL_6GXN_101tRNA D-loop
HL_6GXN_103T-loop with 2 stacked bulged bases

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6GXN_0011/A/24:30,
1/A/510:516		Triple sheared with non-canonical cWW
geometric
IL_4WF9_001
IL_22311.1
IL_6GXN_0021/A/36:37,
1/A/442:444		Single bulged A
homologous
IL_5J7L_246
NA
IL_6GXN_0031/A/43:44,
1/A/434:436		Minor groove platform
homologous
IL_5J7L_247
NA
IL_6GXN_0051/A/183:184,
1/A/212:214		Single stack bend
homologous
IL_7A0S_005
IL_15011.2
IL_6GXN_0061/A/188:194,
1/A/201:208		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_250
NA
IL_6GXN_0071/A/239:245,
1/A/253:258		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_251
NA
IL_6GXN_0111/A/481:484,
1/A/496:509		No text annotation
geometric
IL_5J7L_255
NA
IL_6GXN_0131/A/564:566,
1/A/575:577		Isolated non-canonical cWW pair
geometric
IL_4ZC7_004
IL_01003.2
IL_6GXN_0141/A/606:610,
1/A/618:622		AAA cross-strand stack
homologous
IL_5J7L_258
NA
IL_6GXN_0151/A/672:674,
1/A/806:808		Isolated non-canonical cWW pair
geometric
IL_5J7L_259
NA
IL_6GXN_0161/A/674:678,
1/A/799:806		tHW-tHW cross-strand stack
homologous
IL_7RQB_018
NA
IL_6GXN_0171/A/697:698,
1/A/763:765		Single bulged A
geometric
IL_4V9F_025
IL_14190.2
IL_6GXN_0201/A/738:740,
1/A/757:758		Major groove platform
homologous
IL_5J7L_264
NA
IL_6GXN_0211/A/775:777,
1/A/787:791		Multiple bulged bases
geometric
IL_4V9F_030
IL_57881.1
IL_6GXN_0241/A/850:851,
1/A/926:928		Single stack bend
homologous
IL_5J7L_269
NA
IL_6GXN_0281/A/870:872,
1/A/905:907		Isolated non-canonical cWW pair
homologous
IL_5J7L_273
NA
IL_6GXN_0301/A/994:996,
1/A/1159:1160		Single bulged C
homologous
IL_7RQB_035
NA
IL_6GXN_0311/A/998:1002,
1/A/1153:1157		UAA/GAN
homologous
IL_7A0S_033
IL_08938.1
IL_6GXN_0321/A/1004:1011,
1/A/1150:1151		SSU/LSU pseudoknot
geometric
IL_5J7L_278
NA
IL_6GXN_0331/A/1011:1013,
1/A/1149:1150		Single bulged U
homologous
IL_4WF9_038
IL_97561.2
IL_6GXN_0341/A/1018:1024,
1/A/1140:1144		Kink-turn related
geometric
IL_4WF9_039
IL_57188.6
IL_6GXN_0351/A/1024:1030,
1/A/1124:1140		No text annotation
geometric
IL_5J7L_281
NA
IL_6GXN_0361/A/1031:1034,
1/A/1121:1123		Isolated non-canonical cWW pair
homologous
IL_5J7L_282
NA
IL_6GXN_0421/A/1202:1206,
1/A/1240:1243		No text annotation
homologous
IL_5J7L_287
NA
IL_6GXN_0441/A/1262:1269,
1/A/2011:2017		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
NA
IL_6GXN_0461/A/1319:1323,
1/A/1331:1333		C-loop
homologous
IL_5J7L_291
NA
IL_6GXN_0481/A/1357:1361,
1/A/1370:1374		tSH-tHW-tHS
homologous
IL_5J7L_293
NA
IL_6GXN_0511/A/1432:1435,
1/A/1557:1561		Tandem non-canonical cWW pairs
homologous
IL_5J7L_296
NA
IL_6GXN_0521/A/1437:1440,
1/A/1551:1555		tSH-tHW
homologous
IL_5J7L_297
NA
IL_6GXN_0531/A/1468:1471,
1/A/1520:1524		No text annotation
homologous
IL_5J7L_299
NA
IL_6GXN_1871/A/1474:1478,
1/A/1513:1517		tSH-tHW-tHS
homologous
IL_5J7L_300
NA
IL_6GXN_0561/A/1489:1491,
1/A/1499:1500		Single bulged A
homologous
IL_5J7L_302
NA
IL_6GXN_0581/A/1651:1656,
1/A/2004:2006		No text annotation
homologous
IL_7A0S_059
IL_12566.5
IL_6GXN_0591/A/1663:1665,
1/A/1995:1997		Isolated tWW turn
homologous
IL_4WF9_063
IL_10432.1
IL_6GXN_0651/A/1770:1771,
1/A/1980:1982		Single bulged A
homologous
IL_4WF9_068
IL_14190.2
IL_6GXN_0661/A/1798:1804,
1/A/1813:1821		Kink-turn related
homologous
IL_4WF9_069
IL_17069.6
IL_6GXN_0681/A/1841:1842,
1/A/1898:1901		Major groove intercalation
homologous
IL_5J7L_315
NA
IL_6GXN_0691/A/1846:1849,
1/A/1893:1894		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_316
NA
IL_6GXN_1891/A/1851:1860,
1/A/1882:1891		No text annotation
homologous
IL_5J7L_387
NA
IL_6GXN_0701/A/1864:1867,
1/A/1874:1878		UAA/GAN related
homologous
IL_5J7L_317
NA
IL_6GXN_0721/A/1934:1945,
1/A/1961:1964		No text annotation
geometric
IL_7A0S_072
IL_04332.3
IL_6GXN_0741/A/2054:2056,
1/A/2612:2615		No text annotation
homologous
IL_5J7L_321
NA
IL_6GXN_0751/A/2067:2069,
1/A/2442:2443		Single bulged U
homologous
IL_7A0S_075
IL_97561.2
IL_6GXN_0761/A/2070:2071,
1/A/2438:2441		Minor groove platform
homologous
IL_7RQB_081
NA
IL_6GXN_0851/A/2202:2204,
1/A/2220:2221		Single bulged U
homologous
IL_5J7L_331
NA
IL_6GXN_0881/A/2453:2454,
1/A/2498:2500		Single stack bend
homologous
IL_4WF9_089
IL_15011.2
IL_6GXN_0891/A/2454:2455,
1/A/2496:2498		Major groove platform
geometric
IL_4WF9_090
IL_48076.8
IL_6GXN_0901/A/2456:2459,
1/A/2493:2495		Major groove platform with extra pair
geometric
IL_7RQB_093
NA
IL_6GXN_0921/A/2466:2470,
1/A/2480:2484		Double sheared with non-canonical cWW
homologous
IL_5J7L_338
NA
IL_6GXN_0931/A/2507:2509,
1/A/2579:2582		No text annotation
homologous
IL_5J7L_339
NA
IL_6GXN_0941/A/2510:2512,
1/A/2574:2578		Isolated non-canonical cWW with bulges
geometric
IL_4WF9_095
IL_68118.2
IL_6GXN_0951/A/2512:2513,
1/A/2571:2574		No text annotation
homologous
IL_4WF9_096
IL_44609.2
IL_6GXN_0961/A/2522:2523,
1/A/2540:2543		Major groove platform with intercalation
homologous
IL_5J7L_342
NA
IL_6GXN_0971/A/2591:2592,
1/A/2601:2603		Single bulged A
homologous
IL_7RQB_101
NA
IL_6GXN_0981/A/2636:2640,
1/A/2774:2782		tSH-tHS-tHW
homologous
IL_7RQB_102
NA
IL_6GXN_1001/A/2680:2684,
1/A/2725:2727		C-loop
homologous
IL_5J7L_347
NA
IL_6GXN_1011/A/2687:2691,
1/A/2718:2722		UAA/GAN related, with intercalation
homologous
IL_5J7L_348
NA
IL_6GXN_1021/A/2695:2696,
1/A/2711:2714		Multiple bulged bases
homologous
IL_5J7L_349
NA
IL_6GXN_1031/A/2737:2742,
1/A/2762:2767		UAA/GAN with extra cWW
homologous
IL_5J7L_350
NA
IL_6GXN_1051/A/2838:2839,
1/A/2878:2880		Major groove intercalation
homologous
IL_4WF9_106
IL_77710.1
IL_6GXN_1061/A/2843:2846,
1/A/2870:2874		Multiple bulged bases with non-canonical cWW
homologous
IL_5J7L_353
NA
IL_6GXN_1071/A/2847:2852,
1/A/2865:2869		tHS double platform
homologous
IL_5J7L_354
NA
IL_6GXN_1111/B/34:38,
1/B/44:48		Symmetric double minor groove platform
homologous
IL_7RQB_114
NA
IL_6GXN_1121/B/71:79,
1/B/97:105		Bacterial 5S Loop E
homologous
IL_5J7L_359
NA
IL_6GXN_1141/a/44:45,
1/a/396:398		Single bulged A
homologous
IL_5J7L_002
NA
IL_6GXN_1151/a/47:52,
1/a/359:361		No text annotation
homologous
IL_5J7L_003
NA
IL_6GXN_1161/a/54:56,
1/a/356:357		Minor groove platform
homologous
IL_4LFB_004
IL_34520.2
IL_6GXN_1171/a/63:66,
1/a/103:104		Multiple bulged bases
homologous
IL_4LFB_005
IL_71421.2
IL_6GXN_1221/a/132:136,
1/a/227:230		No text annotation
homologous
IL_4LFB_008
IL_60988.2
IL_6GXN_1261/a/242:247,
1/a/277:284		Kink-turn with non-sequential stacking
homologous
IL_5J7L_014
NA
IL_6GXN_1271/a/249:252,
1/a/274:275		No text annotation
homologous
IL_4LFB_012
IL_22002.1
IL_6GXN_1281/a/292:293,
1/a/304:308		C-loop
homologous
IL_4LFB_013
IL_06671.1
IL_6GXN_1291/a/367:369,
1/a/392:393		Single bulged U
homologous
IL_5J7L_017
NA
IL_6GXN_1301/a/371:375,
1/a/389:390		C-loop
homologous
IL_5J7L_018
NA
IL_6GXN_1311/a/375:376,
1/a/387:389		Single bulged G
geometric
IL_5J7L_019
NA
IL_6GXN_1361/a/504:511,
1/a/540:541		SSU/LSU pseudoknot
homologous
IL_4LFB_020
IL_11411.1
IL_6GXN_1371/a/515:521,
1/a/528:536		Kink-turn related
geometric
IL_4V88_415
NA
IL_6GXN_1391/a/580:584,
1/a/757:761		tSH-tHW-tHS
homologous
IL_5J7L_027
NA
IL_6GXN_1401/a/594:596,
1/a/644:645		Major groove platform
homologous
IL_5J7L_028
NA
IL_6GXN_1411/a/597:598,
1/a/640:643		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_029
NA
IL_6GXN_1421/a/605:612,
1/a/628:633		No text annotation
homologous
IL_5J7L_030
NA
IL_6GXN_1431/a/654:655,
1/a/751:754		Major groove platform; stack outside cWW
homologous
IL_4LFB_027
IL_74641.2
IL_6GXN_1491/a/779:783,
1/a/799:803		tSH-tHW-tHS
homologous
IL_5J7L_037
NA
IL_6GXN_1501/a/887:894,
1/a/905:910		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
NA
IL_6GXN_1511/a/922:923,
1/a/1393:1395		Single bulged A
homologous
IL_5J7L_039
NA
IL_6GXN_1521/a/925:927,
1/a/1390:1391		Single bulged G
homologous
IL_5J7L_040
NA
IL_6GXN_1531/a/933:935,
1/a/1380:1384		Minor groove platform
homologous
IL_5J7L_041
NA
IL_6GXN_1541/a/953:954,
1/a/1226:1228		No text annotation
homologous
IL_6CZR_150
NA
IL_6GXN_1581/a/1048:1050,
1/a/1208:1209		Single bulged U
homologous
IL_5J7L_046
NA
IL_6GXN_1591/a/1052:1056,
1/a/1204:1206		Isolated cWS basepair
homologous
IL_4LFB_044
IL_82453.1
IL_6GXN_1621/a/1061:1063,
1/a/1193:1195		Isolated non-canonical cWW pair
geometric
IL_5J7L_050
NA
IL_6GXN_1651/a/1158:1161,
1/a/1175:1181		No text annotation
geometric
IL_5J7L_053
NA
IL_6GXN_1711/a/1401:1404,
1/a/1497:1501		No text annotation
homologous
IL_5J7L_059
NA
IL_6GXN_1721/a/1405:1407,
1/a/1494:1496		Isolated non-canonical cWW pair
geometric
IL_4V83_235
IL_01003.2
IL_6GXN_1731/a/1407:1409,
1/a/1491:1494		Stack and bulge
geometric
IL_2O3X_001
IL_53541.1
IL_6GXN_1751/a/1416:1419,
1/a/1481:1484		Double sheared
homologous
IL_6CZR_169
NA

Problematic loops

#loop idProblemSequence
IL_6GXN_179Minor groove platform with extra cWW
IL_6GXN_004No text annotation
IL_6GXN_008No text annotation
IL_6GXN_180No text annotation
IL_6GXN_009No text annotation
IL_6GXN_181No text annotation
IL_6GXN_010No text annotation
IL_6GXN_012Double sheared
IL_6GXN_018Single bulged G
IL_6GXN_019Triple sheared
IL_6GXN_02290 degree turn
IL_6GXN_182No text annotation
IL_6GXN_023Stack outside cWW
IL_6GXN_0257x7 Sarcin-Ricin with intercalated A; G-bulge
IL_6GXN_026Single bulged G
IL_6GXN_027C-loop
IL_6GXN_029Double sheared with non-canonical cWW
IL_6GXN_183No text annotation
IL_6GXN_037Tandem non-canonical cWW pairs
IL_6GXN_184Kink-turn
IL_6GXN_038No text annotation
IL_6GXN_039No text annotation
IL_6GXN_185No text annotation
IL_6GXN_040No text annotation
IL_6GXN_041Isolated cWS basepair
IL_6GXN_043Kink-turn
IL_6GXN_045Major groove platform; stack outside cWW
IL_6GXN_047UAA/GAN
IL_6GXN_049No text annotation
IL_6GXN_186No text annotation
IL_6GXN_050UAA/GAN
IL_6GXN_054No text annotation
IL_6GXN_055180 degree turn
IL_6GXN_057UAA/GAN variation
IL_6GXN_060Major groove platform; stack outside cWW
IL_6GXN_188No text annotation
IL_6GXN_061Intercalated tWH
IL_6GXN_062tSH-tSH-tHH-tHS
IL_6GXN_0636x5 Sarcin-Ricin; G-bulge
IL_6GXN_064Triple sheared
IL_6GXN_067Minor groove platform, major groove intercalation
IL_6GXN_071Bulged stacked bases
IL_6GXN_073Major groove platform
IL_6GXN_077Isolated tHS basepair with bulges
IL_6GXN_078Isolated non-canonical cWW pair
IL_6GXN_190Tandem non-canonical cWW pairs
IL_6GXN_079Isolated non-canonical cWW pair
IL_6GXN_191Tandem non-canonical cWW pairs
IL_6GXN_080Isolated non-canonical cWW pair
IL_6GXN_081No text annotation
IL_6GXN_192No text annotation
IL_6GXN_082Kink-turn related
IL_6GXN_083No text annotation
IL_6GXN_193No text annotation
IL_6GXN_084No text annotation
IL_6GXN_086Double sheared
IL_6GXN_087No text annotation
IL_6GXN_091Major groove minor groove platform with extra cWW
IL_6GXN_194No text annotation
IL_6GXN_099Sarcin-Ricin target in LSU H95; G-bulge
IL_6GXN_104No text annotation
IL_6GXN_108Major groove intercalation
IL_6GXN_109No text annotation
IL_6GXN_199No text annotation
IL_6GXN_110Major groove minor groove platform; mini C-loop
IL_6GXN_113Single bulged G
IL_6GXN_118Minor groove platform with extra cWW
IL_6GXN_119Minor groove platform
IL_6GXN_195Single bulged G
IL_6GXN_120Single bulged G, near cWW
IL_6GXN_121Isolated non-canonical cWW pair
IL_6GXN_123Isolated cWH basepair
IL_6GXN_124tWH-tWH-tHW-tHW
IL_6GXN_125Minor groove platform
IL_6GXN_132No text annotation
IL_6GXN_133No text annotation
IL_6GXN_134tSH-tHW-tWW
IL_6GXN_135No text annotation
IL_6GXN_138No text annotation
IL_6GXN_144No text annotation
IL_6GXN_196Single stack bend
IL_6GXN_145Tandem non-canonical cWW pairs
IL_6GXN_197Triple non-canonical cWW pairs
IL_6GXN_146No text annotation
IL_6GXN_147No text annotation
IL_6GXN_148Left turn
IL_6GXN_1989x7 Sarcin-Ricin with inserted C; G-bulge
IL_6GXN_155Minor groove platform
IL_6GXN_156Single stack bend
IL_6GXN_157No text annotation
IL_6GXN_160Minor groove platform
IL_6GXN_161Single bulged A
IL_6GXN_163No text annotation
IL_6GXN_200No text annotation
IL_6GXN_164Minor groove platform
IL_6GXN_166No text annotation
IL_6GXN_167180 degree turn
IL_6GXN_168Double sheared with non-canonical cWW
IL_6GXN_169No text annotation
IL_6GXN_170No text annotation
IL_6GXN_174Isolated non-canonical cWW pair
IL_6GXN_176Triple sheared related
IL_6GXN_177Single bulged A
IL_6GXN_178No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6GXN_0261/A/32:35,
1/A/445:461,
1/A/468:473		No text annotation
homologous
J3_5J7L_067
NA
J3_6GXN_0021/A/56:57,
1/A/70:76,
1/A/110:114		No text annotation
homologous
J3_5J7L_037
NA
J3_6GXN_0031/A/683:689,
1/A/773:775,
1/A/791:794		No text annotation
homologous
J3_5J7L_038
NA
J3_6GXN_0041/A/698:700,
1/A/732:736,
1/A/760:763		No text annotation
homologous
J3_7RQB_005
NA
J3_6GXN_0051/A/1298:1303,
1/A/1625:1627,
1/A/1639:1642		No text annotation
homologous
J3_7A0S_006
J3_32852.7
J3_6GXN_0061/A/1306:1309,
1/A/1605:1611,
1/A/1620:1622		No text annotation
homologous
J3_5J7L_042
NA
J3_6GXN_0281/A/1344:1349,
1/A/1382:1385,
1/A/1402:1403		No text annotation
homologous
J3_5J7L_043
NA
J3_6GXN_0291/A/1424:1429,
1/A/1564:1565,
1/A/1568:1574		No text annotation
homologous
J3_5J7L_069
NA
J3_6GXN_0081/A/2091:2093,
1/A/2196:2200,
1/A/2223:2228		Kink-turn 3-way junction
homologous
J3_5J7L_044
NA
J3_6GXN_0091/A/2295:2299,
1/A/2317:2323,
1/A/2332:2337		No text annotation
homologous
J3_5J7L_071
NA
J3_6GXN_0101/A/2517:2520,
1/A/2545:2547,
1/A/2561:2567		No text annotation
homologous
J3_5J7L_046
NA
J3_6GXN_0121/A/2812:2815,
1/A/2831:2836,
1/A/2882:2888		No text annotation
homologous
J3_5J7L_048
NA
J3_6GXN_0301/a/46:52,
1/a/359:367,
1/a/393:395		No text annotation
homologous
J3_4LFB_014
J3_63856.1
J3_6GXN_0151/a/586:588,
1/a/651:654,
1/a/754:755		No text annotation
homologous
J3_5J7L_002
NA
J3_6GXN_0311/a/586:588,
1/a/651:655,
1/a/751:755		No text annotation
homologous
J3_4LFB_015
J3_17385.5
J3_6GXN_0181/a/936:939,
1/a/1344:1350,
1/a/1372:1379		No text annotation
homologous
J3_4LFB_002
J3_85722.1
J3_6GXN_0201/a/955:962,
1/a/973:984,
1/a/1221:1225		No text annotation
homologous
J3_5J7L_006
NA
J3_6GXN_0221/a/1063:1068,
1/a/1107:1113,
1/a/1187:1193		No text annotation
homologous
J3_4LFB_007
J3_01343.1
J3_6GXN_0331/a/1073:1074,
1/a/1083:1086,
1/a/1099:1102		No text annotation
homologous
J3_4LFB_017
J3_11018.1
J3_6GXN_0241/a/1116:1118,
1/a/1155:1158,
1/a/1181:1184		No text annotation
homologous
J3_5J7L_010
NA
J3_6GXN_0341/a/1116:1118,
1/a/1155:1161,
1/a/1175:1184		No text annotation
homologous
J3_5J7L_054
NA
J4_6GXN_0011/A/268:269,
1/A/370:375,
1/A/399:406,
1/A/421:424		No text annotation
homologous
J4_5J7L_018
NA
J4_6GXN_0021/A/601:604,
1/A/624:628,
1/A/635:638,
1/A/650:656		No text annotation
homologous
J4_5J7L_020
NA
J4_6GXN_0031/A/1270:1276,
1/A/1294:1295,
1/A/1645:1648,
1/A/2009:2010		No text annotation
homologous
J4_5J7L_021
NA
J4_6GXN_0071/A/1772:1776,
1/A/1788:1792,
1/A/1827:1830,
1/A/1975:1979		No text annotation
homologous
J4_5J7L_025
NA
J4_6GXN_0081/A/1833:1835,
1/A/1905:1906,
1/A/1924:1933,
1/A/1967:1972		No text annotation
homologous
J4_9DFE_008
J4_42306.1
J4_6GXN_0151/A/2285:2289,
1/A/2343:2347,
1/A/2370:2372,
1/A/2381:2383		No text annotation
homologous
J4_5J7L_027
NA
J4_6GXN_0131/a/575:577,
1/a/764:769,
1/a/810:821,
1/a/879:880		No text annotation
homologous
J4_5J7L_003
NA
J5_6GXN_0011/A/47:54,
1/A/116:121,
1/A/130:131,
1/A/148:150,
1/A/176:178		No text annotation
homologous
J5_5J7L_013
NA
J5_6GXN_0021/A/531:533,
1/A/560:564,
1/A/577:579,
1/A/1261:1262,
1/A/2017:2018		No text annotation
homologous
J5_5J7L_014
NA
J5_6GXN_0031/A/584:589,
1/A/668:671,
1/A/809:812,
1/A/1195:1196,
1/A/1250:1256		No text annotation
homologous
J5_5J7L_015
NA
J5_6GXN_0041/A/1674:1682,
1/A/1706:1707,
1/A/1751:1752,
1/A/1756:1764,
1/A/1988:1990		No text annotation
homologous
J5_5J7L_016
NA
J5_6GXN_0051/A/2057:2064,
1/A/2446:2453,
1/A/2500:2507,
1/A/2582:2588,
1/A/2606:2611		No text annotation
J5_6GXN_0061/a/36:39,
1/a/403:406,
1/a/436:440,
1/a/497:500,
1/a/545:548		No text annotation
homologous
J5_5J7L_001
NA
J5_6GXN_0071/a/36:39,
1/a/403:406,
1/a/436:442,
1/a/492:500,
1/a/545:548		No text annotation
homologous
J5_5J7L_002
NA
J5_6GXN_0081/a/58:61,
1/a/106:113,
1/a/314:316,
1/a/337:339,
1/a/350:354		No text annotation
homologous
J5_4LFB_002
J5_58574.1
J6_6GXN_0011/A/45:46,
1/A/179:183,
1/A/214:225,
1/A/230:235,
1/A/262:266,
1/A/426:433		No text annotation
J6_6GXN_0021/A/2074:2077,
1/A/2243:2246,
1/A/2258:2259,
1/A/2281:2284,
1/A/2384:2395,
1/A/2421:2435		No text annotation
J7_6GXN_0011/A/8:15,
1/A/525:531,
1/A/2018:2023,
1/A/2040:2043,
1/A/2625:2630,
1/A/2788:2789,
1/A/2894:2895		No text annotation
J7_6GXN_0021/A/817:822,
1/A/835:838,
1/A/940:946,
1/A/971:976,
1/A/987:991,
1/A/1163:1164,
1/A/1185:1190		No text annotation

Problematic loops

#loop idProblemSequence
J3_6GXN_001No text annotation
J3_6GXN_027No text annotation
J3_6GXN_007No text annotation
J3_6GXN_011No text annotation
J3_6GXN_013No text annotation
J3_6GXN_014No text annotation
J3_6GXN_016No text annotation
J3_6GXN_017No text annotation
J3_6GXN_019No text annotation
J3_6GXN_021No text annotation
J3_6GXN_032No text annotation
J3_6GXN_023No text annotation
J3_6GXN_025No text annotation
J4_6GXN_004No text annotation
J4_6GXN_005No text annotation
J4_6GXN_006No text annotation
J4_6GXN_009No text annotation
J4_6GXN_010No text annotation
J4_6GXN_011No text annotation
J4_6GXN_012No text annotation
J4_6GXN_014tRNA junction

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