HL_6GXN_041

3D structure

PDB id

6GXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

6GXN|1|A|U|1729, 6GXN|1|A|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GXN_041 not in the Motif Atlas

Homologous match to HL_5J7L_214

Geometric discrepancy: 0.2628

The information below is about HL_5J7L_214

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6GXN|1|A|C|1727
6GXN|1|A|C|1728
6GXN|1|A|U|1729
6GXN|1|A|C|1730
6GXN|1|A|G|1731
6GXN|1|A|C|1732
6GXN|1|A|G|1733

Current chains

Chain A

23S ribosomal RNA

Nearby chains