HL_6GXN_077

3D structure

PDB id

6GXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

6GXN|1|a|C|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GXN_077 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.2519

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6GXN|1|a|A|320
6GXN|1|a|A|321
6GXN|1|a|C|322
6GXN|1|a|U|323
6GXN|1|a|G|324
6GXN|1|a|A|325
6GXN|1|a|G|326
6GXN|1|a|A|327
6GXN|1|a|C|328
6GXN|1|a|A|329
6GXN|1|a|C|330
6GXN|1|a|G|331
6GXN|1|a|G|332
6GXN|1|a|U|333

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20