HL_6GXN_098

3D structure

PDB id

6GXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAUCAGAAUGC

Length

11 nucleotides

Bulged bases

6GXN|1|a|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GXN_098 not in the Motif Atlas

Homologous match to HL_4LFB_030

Geometric discrepancy: 0.1632

The information below is about HL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6GXN|1|a|G|1356
6GXN|1|a|A|1357
6GXN|1|a|U|1358
6GXN|1|a|C|1359
6GXN|1|a|A|1360
6GXN|1|a|G|1361
6GXN|1|a|A|1362
6GXN|1|a|A|1363
6GXN|1|a|U|1364
6GXN|1|a|G|1365
6GXN|1|a|C|1366

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S9

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14