HL_6GXN_103
3D structure
- PDB id
- 6GXN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GXN_103 not in the Motif Atlas
- Homologous match to HL_3ZGZ_003
- Geometric discrepancy: 0.1555
- The information below is about HL_3ZGZ_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
6GXN|1|x|G|54
6GXN|1|x|U|55
6GXN|1|x|U|56
6GXN|1|x|C|57
6GXN|1|x|A|58
6GXN|1|x|A|59
6GXN|1|x|A|60
6GXN|1|x|U|61
6GXN|1|x|C|62
Current chains
- Chain x
- fMet-tRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L33
- Chain F
- 50S ribosomal protein L5
Coloring options: