HL_6GXO_012
3D structure
- PDB id
- 6GXO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and P/E-tRNA (State IV)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GACACGUGGUAUC
- Length
- 13 nucleotides
- Bulged bases
- 6GXO|1|A|G|386, 6GXO|1|A|G|389
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GXO_012 not in the Motif Atlas
- Homologous match to HL_4WF9_013
- Geometric discrepancy: 0.2972
- The information below is about HL_4WF9_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_69139.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6GXO|1|A|G|381
6GXO|1|A|A|382
6GXO|1|A|C|383
6GXO|1|A|A|384
6GXO|1|A|C|385
6GXO|1|A|G|386
6GXO|1|A|U|387
6GXO|1|A|G|388
6GXO|1|A|G|389
6GXO|1|A|U|390
6GXO|1|A|A|391
6GXO|1|A|U|392
6GXO|1|A|C|393
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain X
- 50S ribosomal protein L28
- Chain x
- Transfer RNA; tRNA
Coloring options: