HL_6GXO_020

3D structure

PDB id

6GXO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and P/E-tRNA (State IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUAACUGG

Length

9 nucleotides

Bulged bases

6GXO|1|A|U|646

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GXO_020 not in the Motif Atlas

Geometric match to HL_9AXU_046

Geometric discrepancy: 0.3816

The information below is about HL_9AXU_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6GXO|1|A|C|640
6GXO|1|A|U|641
6GXO|1|A|U|642
6GXO|1|A|A|643
6GXO|1|A|A|644
6GXO|1|A|C|645
6GXO|1|A|U|646
6GXO|1|A|G|647
6GXO|1|A|G|648

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L33

Chain 3

50S ribosomal protein L35