HL_6GXO_048
3D structure
- PDB id
- 6GXO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and P/E-tRNA (State IV)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGUAAGUUC
- Length
- 9 nucleotides
- Bulged bases
- 6GXO|1|A|U|1955
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GXO_048 not in the Motif Atlas
- Homologous match to HL_5J7L_182
- Geometric discrepancy: 0.1618
- The information below is about HL_5J7L_182
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_20167.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
6GXO|1|A|G|1949
6GXO|1|A|G|1950
6GXO|1|A|U|1951
6GXO|1|A|A|1952
6GXO|1|A|A|1953
6GXO|1|A|G|1954
6GXO|1|A|U|1955
6GXO|1|A|U|1956
6GXO|1|A|C|1957
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain K
- 50S ribosomal protein L14
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain v
- Peptide chain release factor RF1
Coloring options: