HL_6GXO_053

3D structure

PDB id

6GXO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and P/E-tRNA (State IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

6GXO|1|A|A|2268, 6GXO|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GXO_053 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.1584

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6GXO|1|A|C|2264
6GXO|1|A|U|2265
6GXO|1|A|A|2266
6GXO|1|A|A|2267
6GXO|1|A|A|2268
6GXO|1|A|G|2269
6GXO|1|A|A|2270
6GXO|1|A|G|2271
6GXO|1|A|U|2272
6GXO|1|A|A|2273
6GXO|1|A|A|2274
6GXO|1|A|C|2275
6GXO|1|A|G|2276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27