HL_6GXO_075

3D structure

PDB id

6GXO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and P/E-tRNA (State IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

6GXO|1|a|U|209, 6GXO|1|a|C|210

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GXO_075 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3354

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51020.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

11

Unit IDs

6GXO|1|a|C|206
6GXO|1|a|C|207
6GXO|1|a|U|208
6GXO|1|a|U|209
6GXO|1|a|C|210
6GXO|1|a|G|211
6GXO|1|a|G|212
6GXO|1|a|G|213

Current chains

Chain a

16S ribosomal RNA

Nearby chains