HL_6GXP_012

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GACACGUGGUAUC

Length

13 nucleotides

Bulged bases

6GXP|1|A|G|386, 6GXP|1|A|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GXP_012 not in the Motif Atlas

Homologous match to HL_4WF9_013

Geometric discrepancy: 0.3026

The information below is about HL_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69139.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6GXP|1|A|G|381
6GXP|1|A|A|382
6GXP|1|A|C|383
6GXP|1|A|A|384
6GXP|1|A|C|385
6GXP|1|A|G|386
6GXP|1|A|U|387
6GXP|1|A|G|388
6GXP|1|A|G|389
6GXP|1|A|U|390
6GXP|1|A|A|391
6GXP|1|A|U|392
6GXP|1|A|C|393

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L28