HL_6GXP_013

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

6GXP|1|A|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GXP_013 not in the Motif Atlas

Homologous match to HL_4WF9_014

Geometric discrepancy: 0.1754

The information below is about HL_4WF9_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6GXP|1|A|G|410
6GXP|1|A|G|411
6GXP|1|A|A|412
6GXP|1|A|C|413
6GXP|1|A|C|414
6GXP|1|A|A|415
6GXP|1|A|U|416
6GXP|1|A|C|417

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15