HL_6GXP_047

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

6GXP|1|A|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GXP_047 not in the Motif Atlas

Homologous match to HL_9DFE_046

Geometric discrepancy: 0.5404

The information below is about HL_9DFE_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

6GXP|1|A|G|1910
6GXP|1|A|U|1911
6GXP|1|A|A|1912
6GXP|1|A|A|1913
6GXP|1|A|C|1914
6GXP|1|A|U|1915
6GXP|1|A|A|1916
6GXP|1|A|U|1917
6GXP|1|A|A|1918
6GXP|1|A|A|1919
6GXP|1|A|C|1920

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA