HL_6GXP_060

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

6GXP|1|A|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GXP_060 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.2076

The information below is about HL_5J7L_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

6GXP|1|A|U|2528
6GXP|1|A|G|2529
6GXP|1|A|A|2530
6GXP|1|A|A|2531
6GXP|1|A|G|2532
6GXP|1|A|U|2533
6GXP|1|A|A|2534
6GXP|1|A|G|2535

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6