HL_6GXP_069

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CAUGCCG

Length

7 nucleotides

Bulged bases

6GXP|1|B|G|41

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GXP_069 not in the Motif Atlas

Geometric match to HL_1MJI_002

Geometric discrepancy: 0.1495

The information below is about HL_1MJI_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59381.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

13

Unit IDs

6GXP|1|B|C|38
6GXP|1|B|A|39
6GXP|1|B|U|40
6GXP|1|B|G|41
6GXP|1|B|C|42
6GXP|1|B|C|43
6GXP|1|B|G|44

Current chains

Chain B

5S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain F

50S ribosomal protein L5

Chain O

50S ribosomal protein L18