HL_6GYV_003

3D structure

PDB id

6GYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Lariat-capping ribozyme (circular permutation form)

Experimental method

X-RAY DIFFRACTION, SOLUTION SCATTERING

Resolution

2.5 Å

Loop

Sequence

GGACGAUC

Length

8 nucleotides

Bulged bases

6GYV|1|A|A|105

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

6GYV|1|A|G|103
6GYV|1|A|G|104
6GYV|1|A|A|105
6GYV|1|A|C|106
6GYV|1|A|G|107
6GYV|1|A|A|108
6GYV|1|A|U|109
6GYV|1|A|C|110

Current chains

Chain A

Lariat-capping ribozyme

Nearby chains