HL_6GZ3_008

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUAAACUCC

Length

10 nucleotides

Bulged bases

6GZ3|1|A2|G|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ3_008 not in the Motif Atlas

Geometric match to HL_4QLM_002

Geometric discrepancy: 0.2855

The information below is about HL_4QLM_002

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_00911.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6GZ3|1|A2|G|308
6GZ3|1|A2|G|309
6GZ3|1|A2|U|310
6GZ3|1|A2|A|311
6GZ3|1|A2|A|312
6GZ3|1|A2|A|313
6GZ3|1|A2|C|314
6GZ3|1|A2|U|315
6GZ3|1|A2|C|316
6GZ3|1|A2|C|317

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AL

ribosomal protein eL13

Chain AN

Ribosomal protein L15

Chain Aa

ribosomal protein uL15

Chain Ai

ribosomal protein eL36

Chain Ao

ribosomal protein eL42