HL_6GZ3_021

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ3_021 not in the Motif Atlas

Homologous match to HL_8C3A_019

Geometric discrepancy: 0.1289

The information below is about HL_8C3A_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6GZ3|1|A2|G|1543
6GZ3|1|A2|G|1544
6GZ3|1|A2|A|1545
6GZ3|1|A2|A|1546
6GZ3|1|A2|A|1547
6GZ3|1|A2|C|1548

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain Ap

ribosomal protein eL43

Chain B1

Small subunit ribosomal RNA; SSU rRNA

Chain BN

ribosomal protein uS15