HL_6GZ3_023

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

6GZ3|1|A2|A|1612, 6GZ3|1|A2|G|1615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ3_023 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.1361

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6GZ3|1|A2|G|1609
6GZ3|1|A2|C|1610
6GZ3|1|A2|G|1611
6GZ3|1|A2|A|1612
6GZ3|1|A2|A|1613
6GZ3|1|A2|A|1614
6GZ3|1|A2|G|1615
6GZ3|1|A2|A|1616
6GZ3|1|A2|C|1617

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AA

Ribosomal protein L8

Chain AN

Ribosomal protein L15

Chain Aj

Ribosomal protein L37