HL_6GZ3_064

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

6GZ3|1|A2|U|4381

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ3_064 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.1715

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6GZ3|1|A2|C|4379
6GZ3|1|A2|G|4380
6GZ3|1|A2|U|4381
6GZ3|1|A2|U|4382
6GZ3|1|A2|C|4383
6GZ3|1|A2|A|4384
6GZ3|1|A2|U|4385
6GZ3|1|A2|A|4386
6GZ3|1|A2|G|4387

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AI

Ribosomal protein L10 (Predicted)

Chain Am

ribosomal protein eL40

Chain Ct

eukaryotic elongation factor 2 (eEF2)