HL_6GZ3_077

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGUUCCUCCC

Length

11 nucleotides

Bulged bases

6GZ3|1|A3|U|123, 6GZ3|1|A3|U|124, 6GZ3|1|A3|C|125, 6GZ3|1|A3|C|128

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ3_077 not in the Motif Atlas

Geometric match to HL_8C3A_012

Geometric discrepancy: 0.3106

The information below is about HL_8C3A_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

6GZ3|1|A3|G|120
6GZ3|1|A3|G|121
6GZ3|1|A3|G|122
6GZ3|1|A3|U|123
6GZ3|1|A3|U|124
6GZ3|1|A3|C|125
6GZ3|1|A3|C|126
6GZ3|1|A3|U|127
6GZ3|1|A3|C|128
6GZ3|1|A3|C|129
6GZ3|1|A3|C|130

Current chains

Chain A3

5.8S ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain AX

ribosomal protein uL23