HL_6GZ3_091

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

6GZ3|1|B1|A|500, 6GZ3|1|B1|C|502, 6GZ3|1|B1|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ3_091 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.5011

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6GZ3|1|B1|C|498
6GZ3|1|B1|G|499
6GZ3|1|B1|A|500
6GZ3|1|B1|C|501
6GZ3|1|B1|C|502
6GZ3|1|B1|C|503
6GZ3|1|B1|G|504

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BE

ribosomal protein eS4

Chain BY

ribosomal protein eS24