HL_6GZ4_008
3D structure
- PDB id
- 6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGUAAACUCC
- Length
- 10 nucleotides
- Bulged bases
- 6GZ4|1|A2|G|309, 6GZ4|1|A2|U|310
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GZ4_008 not in the Motif Atlas
- Homologous match to HL_8C3A_009
- Geometric discrepancy: 0.1592
- The information below is about HL_8C3A_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
6GZ4|1|A2|G|308
6GZ4|1|A2|G|309
6GZ4|1|A2|U|310
6GZ4|1|A2|A|311
6GZ4|1|A2|A|312
6GZ4|1|A2|A|313
6GZ4|1|A2|C|314
6GZ4|1|A2|U|315
6GZ4|1|A2|C|316
6GZ4|1|A2|C|317
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain AL
- ribosomal protein eL13
- Chain AN
- ribosomal protein eL15
- Chain Aa
- ribosomal protein uL15
- Chain Ai
- ribosomal protein eL36
- Chain Ao
- ribosomal protein eL42
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