Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6GZ4_0011/A2/37:44No text annotation
homologous
HL_5TBW_001
NA
HL_6GZ4_0021/A2/68:73No text annotation
homologous
HL_8C3A_002
NA
HL_6GZ4_0031/A2/89:95No text annotation
homologous
HL_8C3A_003
NA
HL_6GZ4_0041/A2/131:137No text annotation
HL_6GZ4_0051/A2/199:208No text annotation
geometric
HL_2ZZM_002
HL_13963.3
HL_6GZ4_0061/A2/218:222No text annotation
homologous
HL_5TBW_006
NA
HL_6GZ4_0071/A2/283:292No text annotation
homologous
HL_8C3A_008
NA
HL_6GZ4_0081/A2/308:317Pseudoknot geometry
homologous
HL_8C3A_009
NA
HL_6GZ4_0091/A2/362:367GNRA
homologous
HL_8C3A_010
NA
HL_6GZ4_0101/A2/387:392GNRA
homologous
HL_8C3A_011
NA
HL_6GZ4_0111/A2/517:630Externally structured
geometric
HL_8C3A_022
NA
HL_6GZ4_0121/A2/750:891Externally structured
geometric
HL_8C3A_022
NA
HL_6GZ4_0131/A2/1088:1147No text annotation
geometric
HL_4WF9_011
HL_75660.5
HL_6GZ4_0141/A2/1161:1166No text annotation
geometric
HL_2Y8W_001
HL_81100.2
HL_6GZ4_0151/A2/1300:1309T-loop with 2 stacked bulged bases
homologous
HL_5TBW_014
NA
HL_6GZ4_1251/A2/1347:1356No text annotation
HL_6GZ4_0171/A2/1372:1377GNRA
homologous
HL_8C3A_016
NA
HL_6GZ4_1261/A2/1389:1394No text annotation
HL_6GZ4_0191/A2/1417:1432No text annotation
HL_6GZ4_0201/A2/1461:1468UNCG variation
geometric
HL_6VMY_004
HL_53890.2
HL_6GZ4_0211/A2/1543:1548GNRA
homologous
HL_8C3A_019
NA
HL_6GZ4_0221/A2/1575:1584No text annotation
homologous
HL_8C3A_020
NA
HL_6GZ4_0231/A2/1609:1617No text annotation
homologous
HL_5TBW_021
NA
HL_6GZ4_0241/A2/1657:1662Externally structured
homologous
HL_8C3A_022
NA
HL_6GZ4_0251/A2/1745:1751GNRA
homologous
HL_5TBW_023
NA
HL_6GZ4_0261/A2/1798:1805No text annotation
homologous
HL_5TBW_024
NA
HL_6GZ4_0271/A2/1845:1851GNRA
homologous
HL_8C3A_025
NA
HL_6GZ4_0281/A2/1867:1874No text annotation
homologous
HL_8C3A_026
NA
HL_6GZ4_0291/A2/1959:1969No text annotation
homologous
HL_5TBW_027
NA
HL_6GZ4_1221/A2/1987:1994GNRA wlth tandem sheared
homologous
HL_8P9A_140
HL_81538.2
HL_6GZ4_0311/A2/2066:2250No text annotation
HL_6GZ4_0321/A2/2296:2301GNRA
homologous
HL_8C3A_030
NA
HL_6GZ4_0331/A2/2355:2363T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_6GZ4_0341/A2/2399:2405Mini UNCG
geometric
HL_4TUW_002
HL_56334.1
HL_6GZ4_0351/A2/2437:2442GNRA variation
homologous
HL_8C3A_033
NA
HL_6GZ4_0361/A2/2466:2470Externally structured
geometric
HL_8C3A_022
NA
HL_6GZ4_0371/A2/2502:2511No text annotation
homologous
HL_5TBW_035
NA
HL_6GZ4_0381/A2/2540:2545GNRA
geometric
HL_5UZ6_001
HL_37824.8
HL_6GZ4_0391/A2/2557:2562GNRA
homologous
HL_8C3A_036
NA
HL_6GZ4_0401/A2/2603:2611No text annotation
homologous
HL_8C3A_037
NA
HL_6GZ4_0411/A2/2643:2649No text annotation
homologous
HL_8C3A_038
NA
HL_6GZ4_0421/A2/2683:2691No text annotation
HL_6GZ4_0431/A2/2717:2721No text annotation
homologous
HL_8C3A_040
NA
HL_6GZ4_0441/A2/2771:2778No text annotation
homologous
HL_8C3A_041
NA
HL_6GZ4_0451/A2/2789:2795GNRA
homologous
HL_8C3A_042
NA
HL_6GZ4_0461/A2/2851:2856UNCG
geometric
HL_4PMI_004
HL_34617.5
HL_6GZ4_0471/A2/3585:3589No text annotation
homologous
HL_8C3A_045
NA
HL_6GZ4_0481/A2/3610:3620No text annotation
homologous
HL_8C3A_046
NA
HL_6GZ4_0491/A2/3639:3645GNRA
homologous
HL_8C3A_047
NA
HL_6GZ4_0501/A2/3695:3700GNRA
homologous
HL_8C3A_048
NA
HL_6GZ4_0511/A2/3728:3738No text annotation
homologous
HL_5TBW_049
NA
HL_6GZ4_0521/A2/3767:3775No text annotation
homologous
HL_8C3A_050
NA
HL_6GZ4_0531/A2/3844:3853No text annotation
homologous
HL_8C3A_051
NA
HL_6GZ4_0541/A2/4072:4076Mini UNCG
geometric
HL_4YAZ_004
HL_48778.2
HL_6GZ4_0551/A2/4104:4111No text annotation
geometric
HL_2Y9H_003
HL_75660.5
HL_6GZ4_0561/A2/4155:4163No text annotation
homologous
HL_5TBW_054
NA
HL_6GZ4_0571/A2/4172:4184No text annotation
homologous
HL_8C3A_056
NA
HL_6GZ4_0581/A2/4212:4220No text annotation
homologous
HL_8C3A_057
NA
HL_6GZ4_0591/A2/4232:4239Pseudoknot geometry
homologous
HL_8C3A_058
NA
HL_6GZ4_0601/A2/4263:4271No text annotation
homologous
HL_8C3A_059
NA
HL_6GZ4_0611/A2/4283:4288GNRA
homologous
HL_8C3A_060
NA
HL_6GZ4_0621/A2/4314:4324No text annotation
geometric
HL_2ZZM_002
HL_13963.3
HL_6GZ4_0631/A2/4379:4387No text annotation
homologous
HL_5TBW_061
NA
HL_6GZ4_0641/A2/4436:4443No text annotation
homologous
HL_5TBW_062
NA
HL_6GZ4_0651/A2/4459:4465No text annotation
homologous
HL_5TBW_063
NA
HL_6GZ4_0661/A2/4502:4507GNRA
homologous
HL_5TBW_064
NA
HL_6GZ4_0671/A2/4565:4570GNRA
homologous
HL_5TBW_065
NA
HL_6GZ4_0681/A2/4608:4613Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_6GZ4_0691/A2/4650:4664No text annotation
homologous
HL_8C3A_068
NA
HL_6GZ4_0701/A2/4865:4872Externally structured
geometric
HL_8C3A_022
NA
HL_6GZ4_0711/A2/4933:4941No text annotation
geometric
HL_5TBW_070
NA
HL_6GZ4_0721/A2/4979:4986No text annotation
geometric
HL_2Y8Y_001
HL_81100.2
HL_6GZ4_0731/A3/47:56No text annotation
geometric
HL_7RQB_001
NA
HL_6GZ4_0741/A3/68:90No text annotation
homologous
HL_8C3A_075
NA
HL_6GZ4_0751/A3/107:112No text annotation
homologous
HL_5TBW_075
NA
HL_6GZ4_0761/A3/120:130No text annotation
HL_6GZ4_1231/A4/32:45No text annotation
homologous
HL_8C3A_228
NA
HL_6GZ4_0771/A4/36:41No text annotation
homologous
HL_5TBW_185
NA
HL_6GZ4_0781/A4/86:91GNRA
homologous
HL_5TBW_186
NA
HL_6GZ4_0791/B1/7:17No text annotation
homologous
HL_4V88_186
NA
HL_6GZ4_0801/B1/69:80No text annotation
geometric
HL_361D_002
HL_13963.3
HL_6GZ4_0811/B1/156:162GNRA related
homologous
HL_4V88_188
NA
HL_6GZ4_0821/B1/197:202GNRA
geometric
HL_4V9F_009
HL_37824.8
HL_6GZ4_0831/B1/239:282No text annotation
geometric
HL_4WF9_011
HL_75660.5
HL_6GZ4_0841/B1/288:295T-loop with 1 bulged base
homologous
HL_4V88_191
NA
HL_6GZ4_0851/B1/322:329No text annotation
HL_6GZ4_0861/B1/377:387No text annotation
HL_6GZ4_0871/B1/416:421No text annotation
homologous
HL_4V88_194
NA
HL_6GZ4_0881/B1/441:452No text annotation
homologous
HL_4V88_195
NA
HL_6GZ4_0891/B1/462:467UNCG
homologous
HL_4V88_196
NA
HL_6GZ4_0901/B1/498:504No text annotation
homologous
HL_4V88_197
NA
HL_6GZ4_0911/B1/539:544No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_6GZ4_0921/B1/569:581No text annotation
homologous
HL_4V88_199
NA
HL_6GZ4_0931/B1/618:623GNRA variation
homologous
HL_4V88_200
NA
HL_6GZ4_0941/B1/692:738No text annotation
HL_6GZ4_0951/B1/751:792Externally structured
geometric
HL_8C3A_022
NA
HL_6GZ4_0961/B1/820:828No text annotation
homologous
HL_4V88_203
NA
HL_6GZ4_0971/B1/833:841No text annotation
homologous
HL_8P9A_207
HL_48417.6
HL_6GZ4_0981/B1/885:901Pseudoknot geometry
homologous
HL_4V88_205
NA
HL_6GZ4_0991/B1/957:966No text annotation
homologous
HL_4V88_206
NA
HL_6GZ4_1001/B1/994:999GNRA
homologous
HL_4V88_207
NA
HL_6GZ4_1011/B1/1054:1064No text annotation
homologous
HL_4V88_208
NA
HL_6GZ4_1021/B1/1112:1121No text annotation
geometric
HL_5TBW_006
NA
HL_6GZ4_1031/B1/1141:1146GNRA
homologous
HL_4V88_210
NA
HL_6GZ4_1041/B1/1178:1183GNRA
homologous
HL_4V88_211
NA
HL_6GZ4_1051/B1/1245:1254No text annotation
homologous
HL_4V88_212
NA
HL_6GZ4_1061/B1/1295:1304Anticodon loop related
homologous
HL_4V88_213
NA
HL_6GZ4_1071/B1/1353:1358GNRA
homologous
HL_4V88_214
NA
HL_6GZ4_1081/B1/1366:1373No text annotation
homologous
HL_4V88_215
NA
HL_6GZ4_1091/B1/1415:1422No text annotation
HL_6GZ4_1101/B1/1460:1466GNRA
geometric
HL_3NVI_002
HL_37824.8
HL_6GZ4_1111/B1/1565:1570GNRA
homologous
HL_4V88_218
NA
HL_6GZ4_1121/B1/1614:1625No text annotation
homologous
HL_4V88_219
NA
HL_6GZ4_1131/B1/1658:1666No text annotation
homologous
HL_4V88_220
NA
HL_6GZ4_1141/B1/1756:1776No text annotation
geometric
HL_2Y8W_001
HL_81100.2
HL_6GZ4_1151/B1/1847:1852GNRA variation
homologous
HL_4V88_222
NA
HL_6GZ4_1161/Bv/12:23No text annotation
homologous
HL_1SER_001
NA
HL_6GZ4_1171/Bv/31:39tRNA anticodon loop
homologous
HL_4TUE_034
HL_06059.7
HL_6GZ4_1181/Bv/53:61T-loop with 2 stacked bulged bases
homologous
HL_4YYE_003
HL_28252.9
HL_6GZ4_1191/Bw/13:22No text annotation
homologous
HL_6PMO_003
NA
HL_6GZ4_1201/Bw/31:39tRNA anticodon loop
homologous
HL_6CFJ_107
HL_06059.7
HL_6GZ4_1211/Bw/53:61T-loop with 2 stacked bulged bases
homologous
HL_3WFS_003
HL_28252.9

Problematic loops

#loop idProblemSequence
HL_6GZ4_016No text annotation
HL_6GZ4_018No text annotation
HL_6GZ4_030No text annotation
HL_6GZ4_124No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6GZ4_0011/A2/6:7,
1/A3/149:151
Single bulged C
homologous
IL_8C3A_002
NA
IL_6GZ4_2911/A2/12:14,
1/A3/143:144
No text annotation
homologous
IL_8CRE_003
IL_89505.4
IL_6GZ4_0031/A2/16:18,
1/A3/139:141
No text annotation
geometric
IL_3ICQ_003
NA
IL_6GZ4_0041/A2/26:27,
1/A2/55:57
No text annotation
homologous
IL_8C3A_004
NA
IL_6GZ4_0051/A2/30:37,
1/A2/44:52
tSH-tHW-tHH-tHS
geometric
IL_5TBW_005
NA
IL_6GZ4_0061/A2/81:88,
1/A2/96:102
No text annotation
homologous
IL_8C3A_006
NA
IL_6GZ4_0071/A2/118:124,
1/A2/143:151
No text annotation
IL_6GZ4_0081/A2/127:129,
1/A2/139:140
Single stack bend
geometric
IL_5J7L_032
IL_26793.1
IL_6GZ4_0091/A2/129:131,
1/A2/137:139
No text annotation
IL_6GZ4_0101/A2/158:160,
1/A2/267:269
Isolated non-canonical cWW pair
geometric
IL_4LFB_061
NA
IL_6GZ4_0111/A2/161:164,
1/A2/263:266
Tandem non-canonical cWW pairs
geometric
IL_4WF9_109
NA
IL_6GZ4_0121/A2/165:167,
1/A2/261:262
Single stack bend
geometric
IL_5J7L_032
IL_26793.1
IL_6GZ4_2721/A2/165:171,
1/A2/257:262
No text annotation
IL_6GZ4_0131/A2/167:171,
1/A2/257:261
No text annotation
IL_6GZ4_0141/A2/171:173,
1/A2/256:257
Single stack bend
geometric
IL_4C7O_002
IL_90729.1
IL_6GZ4_0151/A2/173:175,
1/A2/253:256
No text annotation
IL_6GZ4_0161/A2/175:180,
1/A2/251:253
No text annotation
IL_6GZ4_0171/A2/180:185,
1/A2/248:251
No text annotation
IL_6GZ4_0181/A2/186:188,
1/A2/246:247
Single stack bend
geometric
IL_4LFB_041
IL_90729.1
IL_6GZ4_0191/A2/189:191,
1/A2/243:245
No text annotation
geometric
IL_8P9A_436
IL_14688.1
IL_6GZ4_0201/A2/198:199,
1/A2/208:210
Single stack bend
geometric
IL_4V9F_081
IL_26793.1
IL_6GZ4_0211/A2/342:344,
1/A3/25:26
Single bulged A
homologous
IL_8C3A_014
NA
IL_6GZ4_0221/A2/409:415,
1/A3/13:19
Triple sheared with non-canonical cWW
homologous
IL_8C3A_016
NA
IL_6GZ4_0231/A2/437:440,
1/A2/1283:1287
No text annotation
geometric
IL_6AZ4_001
NA
IL_6GZ4_0241/A2/450:453,
1/A2/689:692
No text annotation
IL_6GZ4_0251/A2/454:456,
1/A2/686:688
Isolated non-canonical cWW pair
geometric
IL_5TBW_027
NA
IL_6GZ4_2921/A2/456:458,
1/A2/684:686
Isolated non-canonical cWW pair
geometric
IL_4YHW_001
IL_87907.2
IL_6GZ4_0271/A2/461:466,
1/A2/676:681
No text annotation
IL_6GZ4_2741/A2/461:468,
1/A2/675:681
No text annotation
IL_6GZ4_0281/A2/466:468,
1/A2/675:676
Single stack bend
geometric
IL_7A0S_005
IL_90729.1
IL_6GZ4_0291/A2/468:469,
1/A2/673:675
Single stack bend
geometric
IL_7RQB_091
NA
IL_6GZ4_2751/A2/468:470,
1/A2/671:675
No text annotation
IL_6GZ4_0301/A2/469:470,
1/A2/671:673
Single stack bend
geometric
IL_5J7L_032
IL_26793.1
IL_6GZ4_0311/A2/470:472,
1/A2/670:671
Not an internal loop
geometric
IL_4UYK_002
NA
IL_6GZ4_0321/A2/472:475,
1/A2/667:670
Tandem non-canonical cWW pairs
geometric
IL_6CZR_168
NA
IL_6GZ4_0331/A2/475:481,
1/A2/663:667
No text annotation
IL_6GZ4_0341/A2/481:484,
1/A2/658:663
No text annotation
IL_6GZ4_2761/A2/481:485,
1/A2/656:663
No text annotation
IL_6GZ4_0351/A2/484:485,
1/A2/656:658
Single stack bend
geometric
IL_5TBW_375
NA
IL_6GZ4_0361/A2/486:489,
1/A2/653:655
No text annotation
geometric
IL_4P3T_002
NA
IL_6GZ4_0371/A2/489:490,
1/A2/651:653
Single stack bend
geometric
IL_4V9F_081
IL_26793.1
IL_6GZ4_0381/A2/491:493,
1/A2/649:650
No text annotation
IL_6GZ4_0391/A2/493:498,
1/A2/648:649
Single stack bend
geometric
IL_4WF9_089
IL_26793.1
IL_6GZ4_0401/A2/502:504,
1/A2/643:644
Single bulged A
geometric
IL_6WPI_001
IL_31462.7
IL_6GZ4_0411/A2/506:509,
1/A2/640:641
Multiple bulged bases
geometric
IL_4LFB_007
IL_33761.2
IL_6GZ4_0421/A2/514:515,
1/A2/632:635
Single stack bend
geometric
IL_4LFB_041
IL_90729.1
IL_6GZ4_0431/A2/699:700,
1/A2/1270:1272
Single bulged G
geometric
IL_4LFB_036
IL_00225.14
IL_6GZ4_0441/A2/713:715,
1/A2/929:933
No text annotation
IL_6GZ4_0451/A2/717:726,
1/A2/915:927
No text annotation
IL_6GZ4_0461/A2/727:729,
1/A2/913:914
No text annotation
IL_6GZ4_0471/A2/731:733,
1/A2/909:911
Isolated non-canonical cWW pair
geometric
IL_4YHW_001
IL_87907.2
IL_6GZ4_0481/A2/734:736,
1/A2/907:908
Single stack bend
geometric
IL_4C7O_002
IL_90729.1
IL_6GZ4_2931/A2/736:743,
1/A2/898:907
No text annotation
IL_6GZ4_2771/A2/1060:1063,
1/A2/1202:1217
No text annotation
IL_6GZ4_0511/A2/1065:1067,
1/A2/1195:1200
No text annotation
IL_6GZ4_2781/A2/1065:1068,
1/A2/1194:1200
No text annotation
IL_6GZ4_0521/A2/1068:1072,
1/A2/1189:1194
No text annotation
geometric
IL_5TBW_121
NA
IL_6GZ4_0531/A2/1072:1074,
1/A2/1188:1189
Single stack bend
geometric
IL_4LFB_041
IL_90729.1
IL_6GZ4_0541/A2/1075:1079,
1/A2/1182:1187
No text annotation
IL_6GZ4_0551/A2/1156:1158,
1/A2/1169:1171
Isolated non-canonical cWW pair
geometric
IL_4LFB_061
NA
IL_6GZ4_0561/A2/1340:1343,
1/A2/1362:1365
No text annotation
IL_6GZ4_0571/A2/1343:1344,
1/A2/1359:1362
Multiple bulged bases
geometric
IL_6JXM_001
IL_84476.1
IL_6GZ4_2791/A2/1408:1411,
1/A2/1438:1442
No text annotation
homologous
IL_8C3A_025
NA
IL_6GZ4_0591/A2/1413:1417,
1/A2/1432:1436
Double sheared with non-canonical cWW
geometric
IL_4WFL_001
IL_17948.2
IL_6GZ4_0601/A2/1449:1450,
1/A2/1478:1480
Single bulged A
homologous
IL_8C3A_026
NA
IL_6GZ4_0611/A2/1456:1458,
1/A2/1471:1472
Single stack bend
geometric
IL_7A0S_005
IL_90729.1
IL_6GZ4_0621/A2/1502:1504,
1/A2/1637:1639
Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_6GZ4_0631/A2/1504:1508,
1/A2/1630:1637
tHW-tHW cross-strand stack
geometric
IL_5TBW_028
NA
IL_6GZ4_0641/A2/1532:1533,
1/A2/1558:1560
Single bulged G
homologous
IL_8C3A_032
NA
IL_6GZ4_0651/A2/1533:1537,
1/A2/1554:1558
Triple sheared
geometric
IL_4WF9_024
IL_50730.2
IL_6GZ4_0661/A2/1568:1571,
1/A2/1587:1589
Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_6GZ4_0671/A2/1572:1574,
1/A2/1585:1586
Single bulged U
homologous
IL_8C3A_035
NA
IL_6GZ4_0681/A2/1606:1608,
1/A2/1618:1622
No text annotation
homologous
IL_8C3A_036
NA
IL_6GZ4_0691/A2/1653:1655,
1/A2/1664:1666
Isolated non-canonical cWW pair
homologous
IL_8C3A_037
NA
IL_6GZ4_0701/A2/1668:1670,
1/A2/1829:1832
No text annotation
IL_6GZ4_0711/A2/1676:1703,
1/A2/1822:1823
No text annotation
IL_6GZ4_0721/A2/1705:1707,
1/A2/1819:1820
Single bulged G
homologous
IL_8C3A_040
NA
IL_6GZ4_0731/A2/1714:1719,
1/A2/1774:1779
5x5 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_7A0S_027
NA
IL_6GZ4_0741/A2/1719:1720,
1/A2/1772:1774
Minor groove platform
homologous
IL_8C3A_042
NA
IL_6GZ4_0751/A2/1721:1726,
1/A2/1768:1771
C-loop with bulged stacked A's
homologous
IL_8C3A_043
NA
IL_6GZ4_0761/A2/1728:1731,
1/A2/1763:1766
Tandem non-canonical cWW pairs
geometric
IL_5TBW_041
NA
IL_6GZ4_0771/A2/1731:1733,
1/A2/1761:1763
Isolated non-canonical cWW pair
homologous
IL_8C3A_045
NA
IL_6GZ4_0781/A2/1735:1738,
1/A2/1757:1759
Major groove platform with extra cWW
geometric
IL_4V9F_003
IL_51387.3
IL_6GZ4_0791/A2/1738:1740,
1/A2/1756:1757
Single stack bend
geometric
IL_4LFB_041
IL_90729.1
IL_6GZ4_0801/A2/1742:1745,
1/A2/1751:1754
Tandem non-canonical cWW pairs
geometric
IL_5TBW_100
NA
IL_6GZ4_0811/A2/1796:1798,
1/A2/1805:1806
Single bulged G
geometric
IL_4V88_442
NA
IL_6GZ4_0821/A2/1839:1841,
1/A2/1855:1857
Isolated non-canonical cWW pair
homologous
IL_5TBW_046
NA
IL_6GZ4_0831/A2/1886:1890,
1/A2/2048:2052
UAA/GAN
homologous
IL_8C3A_051
NA
IL_6GZ4_0841/A2/1892:1899,
1/A2/2045:2046
SSU/LSU pseudoknot
homologous
IL_8C3A_052
NA
IL_6GZ4_0851/A2/1899:1901,
1/A2/2044:2045
No text annotation
IL_6GZ4_0861/A2/1901:1903,
1/A2/2043:2044
No text annotation
IL_6GZ4_0871/A2/1907:1914,
1/A2/2034:2039
No text annotation
homologous
IL_8C3A_054
NA
IL_6GZ4_0881/A2/1914:1925,
1/A2/2019:2034
No text annotation
geometric
IL_5TBW_052
NA
IL_6GZ4_0891/A2/1927:1929,
1/A2/2016:2017
Single bulged U
homologous
IL_5TBW_053
NA
IL_6GZ4_0901/A2/1938:1946,
1/A2/2003:2007
No text annotation
IL_6GZ4_0911/A2/1954:1959,
1/A2/1969:1974
No text annotation
IL_6GZ4_0921/A2/1982:1986,
1/A2/1995:1997
Major groove platform with extra cWW
homologous
IL_8C3A_059
NA
IL_6GZ4_0931/A2/2064:2066,
1/A2/2250:2252
No text annotation
geometric
IL_3ICQ_003
NA
IL_6GZ4_0941/A2/2269:2271,
1/A2/2321:2324
No text annotation
homologous
IL_8C3A_061
NA
IL_6GZ4_0951/A2/2278:2280,
1/A2/2313:2314
Single bulged A
geometric
IL_3OXE_001
IL_31462.7
IL_6GZ4_0961/A2/2280:2282,
1/A2/2312:2313
Single stack bend
geometric
IL_7RQB_005
NA
IL_6GZ4_0971/A2/2282:2288,
1/A2/2308:2312
No text annotation
IL_6GZ4_0981/A2/2291:2293,
1/A2/2304:2305
Single bulged A
geometric
IL_5WWT_001
IL_31462.7
IL_6GZ4_0991/A2/2337:2343,
1/A2/3829:3834
No text annotation
homologous
IL_8C3A_065
NA
IL_6GZ4_1001/A2/2385:2388,
1/A2/2762:2763
Major groove platform; stack outside cWW
geometric
IL_7A0S_046
IL_50694.7
IL_6GZ4_1011/A2/2394:2399,
1/A2/2405:2408
No text annotation
IL_6GZ4_1021/A2/2425:2429,
1/A2/2488:2493
UAA/GAN
homologous
IL_8C3A_067
NA
IL_6GZ4_1031/A2/2456:2458,
1/A2/2478:2479
Minor groove platform
geometric
IL_4V88_412
NA
IL_6GZ4_1041/A2/2521:2526,
1/A2/2751:2753
Isolated non-canonical cWW pair
geometric
IL_3TD0_005
IL_57744.1
IL_6GZ4_1051/A2/2528:2529,
1/A2/2747:2749
Single bulged U
geometric
IL_2R8S_004
IL_89505.4
IL_6GZ4_1061/A2/2568:2572,
1/A2/2731:2735
Triple sheared
homologous
IL_5TBW_067
NA
IL_6GZ4_1071/A2/2592:2593,
1/A2/2703:2705
Single bulged A
geometric
IL_7A0S_012
IL_31462.7
IL_6GZ4_1081/A2/2593:2594,
1/A2/2701:2703
Single stack bend
homologous
IL_8C3A_076
NA
IL_6GZ4_1091/A2/2625:2627,
1/A2/2664:2667
Decoding loop related
geometric
IL_2O3X_003
IL_31737.3
IL_6GZ4_1101/A2/2630:2632,
1/A2/2660:2661
Single bulged G
geometric
IL_2IZN_001
IL_00225.14
IL_6GZ4_1111/A2/2635:2641,
1/A2/2651:2657
Kink-turn
homologous
IL_5TBW_073
NA
IL_6GZ4_1121/A2/2811:2817,
1/A2/3821:3824
No text annotation
homologous
IL_8C3A_080
NA
IL_6GZ4_1131/A2/2823:2825,
1/A2/3813:3815
No text annotation
homologous
IL_8C3A_081
NA
IL_6GZ4_1141/A2/2826:2829,
1/A2/3811:3812
Major groove platform; stack outside cWW
homologous
IL_8C3A_082
NA
IL_6GZ4_2801/A2/2826:2834,
1/A2/3808:3812
No text annotation
homologous
IL_8C3A_484
NA
IL_6GZ4_1151/A2/2829:2834,
1/A2/3808:3811
Intercalated tWH
geometric
IL_5TBW_077
NA
IL_6GZ4_1161/A2/2846:2851,
1/A2/2856:2862
No text annotation
homologous
IL_8C3A_084
NA
IL_6GZ4_1171/A2/2868:2870,
1/A2/3581:3583
Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_6GZ4_1181/A2/2875:2876,
1/A2/3573:3576
No text annotation
homologous
IL_8C3A_086
NA
IL_6GZ4_1191/A2/2879:2881,
1/A2/3569:3570
No text annotation
IL_6GZ4_1201/A2/3603:3604,
1/A2/3798:3800
Single bulged A
homologous
IL_8C3A_087
NA
IL_6GZ4_1211/A2/3631:3636,
1/A2/3648:3655
No text annotation
homologous
IL_8C3A_088
NA
IL_6GZ4_1221/A2/3671:3674,
1/A2/3720:3721
No text annotation
homologous
IL_8C3A_089
NA
IL_6GZ4_1231/A2/3675:3676,
1/A2/3716:3719
Multiple bulged bases
homologous
IL_8C3A_090
NA
IL_6GZ4_1241/A2/3679:3685,
1/A2/3710:3713
No text annotation
IL_6GZ4_1251/A2/3686:3692,
1/A2/3703:3709
No text annotation
homologous
IL_8C3A_093
NA
IL_6GZ4_1261/A2/3725:3726,
1/A2/3740:3742
Single stack bend
geometric
IL_4WF9_007
IL_90729.1
IL_6GZ4_1271/A2/3751:3752,
1/A2/3782:3785
No text annotation
homologous
IL_8C3A_094
NA
IL_6GZ4_1281/A2/3752:3763,
1/A2/3779:3782
No text annotation
geometric
IL_5TBW_090
NA
IL_6GZ4_1291/A2/3866:3869,
1/A2/4525:4527
No text annotation
homologous
IL_8C3A_096
NA
IL_6GZ4_1301/A2/3871:3873,
1/A2/4520:4523
No text annotation
homologous
IL_8C3A_097
NA
IL_6GZ4_1311/A2/3884:3886,
1/A2/4350:4351
Single bulged U
homologous
IL_8C3A_098
NA
IL_6GZ4_1321/A2/3887:3888,
1/A2/4346:4349
Minor groove platform
homologous
IL_5TBW_094
NA
IL_6GZ4_1331/A2/3898:3900,
1/A2/4143:4146
No text annotation
homologous
IL_8C3A_100
NA
IL_6GZ4_1341/A2/3919:3920,
1/A2/4033:4035
No text annotation
IL_6GZ4_1351/A2/3921:3923,
1/A2/4030:4032
Isolated non-canonical cWW pair
geometric
IL_7A0S_026
IL_87907.2
IL_6GZ4_1361/A2/3925:3937,
1/A2/4025:4028
No text annotation
IL_6GZ4_1371/A2/3941:3944,
1/A2/4008:4021
No text annotation
geometric
IL_3U4M_003
IL_75283.2
IL_6GZ4_1381/A2/4052:4058,
1/A2/4123:4126
No text annotation
homologous
IL_8C3A_106
NA
IL_6GZ4_1391/A2/4064:4067,
1/A2/4082:4083
No text annotation
IL_6GZ4_1401/A2/4067:4069,
1/A2/4080:4082
Isolated near basepair
geometric
IL_3NJ7_003
IL_42997.3
IL_6GZ4_1411/A2/4069:4071,
1/A2/4077:4080
Major groove platform with extra cWW
geometric
IL_3PDR_004
IL_51387.3
IL_6GZ4_1421/A2/4153:4154,
1/A2/4164:4166
Single bulged A
homologous
IL_5TBW_098
NA
IL_6GZ4_1431/A2/4205:4207,
1/A2/4225:4229
No text annotation
homologous
IL_8C3A_108
NA
IL_6GZ4_1441/A2/4257:4260,
1/A2/4274:4277
Tandem non-canonical cWW pairs
homologous
IL_5TBW_100
NA
IL_6GZ4_1451/A2/4309:4312,
1/A2/4326:4327
Single stack bend
geometric
IL_5J7L_032
IL_26793.1
IL_6GZ4_1461/A2/4362:4363,
1/A2/4404:4406
Major groove platform
geometric
IL_5TBW_102
NA
IL_6GZ4_1471/A2/4363:4365,
1/A2/4402:4404
Isolated non-canonical cWW pair
geometric
IL_5TBW_103
NA
IL_6GZ4_1481/A2/4365:4367,
1/A2/4401:4402
Major groove platform
homologous
IL_8C3A_112
NA
IL_6GZ4_1491/A2/4367:4369,
1/A2/4397:4401
Major groove minor groove platform with extra cWW
homologous
IL_8C3A_113
NA
IL_6GZ4_1501/A2/4374:4378,
1/A2/4388:4392
No text annotation
homologous
IL_8C3A_114
NA
IL_6GZ4_1511/A2/4415:4416,
1/A2/4488:4490
Major groove platform
homologous
IL_5TBW_107
NA
IL_6GZ4_1521/A2/4418:4420,
1/A2/4482:4486
No text annotation
homologous
IL_8C3A_116
NA
IL_6GZ4_1531/A2/4420:4421,
1/A2/4479:4482
Multiple bulged bases
geometric
IL_5TBW_109
NA
IL_6GZ4_1541/A2/4428:4430,
1/A2/4451:4453
No text annotation
geometric
IL_4KR9_001
NA
IL_6GZ4_2811/A2/4428:4432,
1/A2/4447:4453
No text annotation
IL_6GZ4_1551/A2/4430:4432,
1/A2/4447:4451
No text annotation
IL_6GZ4_1561/A2/4457:4459,
1/A2/4465:4467
Isolated non-canonical cWW pair
geometric
IL_1RPU_001
IL_87907.2
IL_6GZ4_1571/A2/4499:4500,
1/A2/4509:4511
Single bulged A
geometric
IL_7RQB_101
NA
IL_6GZ4_1581/A2/4542:4547,
1/A2/4679:4685
No text annotation
IL_6GZ4_1591/A2/4552:4554,
1/A2/4580:4582
Isolated non-canonical cWW pair
homologous
IL_8C3A_124
NA
IL_6GZ4_1601/A2/4558:4565,
1/A2/4570:4576
8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_6GZ4_1611/A2/4586:4591,
1/A2/4631:4635
No text annotation
IL_6GZ4_1621/A2/4594:4599,
1/A2/4624:4628
UAA/GAN related
homologous
IL_5TBW_118
NA
IL_6GZ4_1631/A2/4600:4602,
1/A2/4621:4623
Not an internal loop
geometric
IL_5VCI_005
NA
IL_6GZ4_2831/A2/4603:4604,
1/A2/4617:4620
No text annotation
homologous
IL_8C3A_128
NA
IL_6GZ4_1651/A2/4642:4647,
1/A2/4667:4672
UAA/GAN with extra cWW
geometric
IL_5J7L_350
IL_49767.8
IL_6GZ4_1661/A2/4701:4704,
1/A2/4916:4918
No text annotation
IL_6GZ4_1671/A2/4704:4708,
1/A2/4912:4916
No text annotation
IL_6GZ4_2941/A2/4705:4709,
1/A2/4910:4915
No text annotation
IL_6GZ4_1681/A2/4708:4709,
1/A2/4910:4912
Single stack bend
geometric
IL_5J7L_032
IL_26793.1
IL_6GZ4_2851/A2/4843:4846,
1/A2/4889:4892
Tandem non-canonical cWW pairs
geometric
IL_8C3A_135
NA
IL_6GZ4_1701/A2/4849:4855,
1/A2/4881:4886
No text annotation
IL_6GZ4_1711/A2/4857:4859,
1/A2/4878:4879
No text annotation
IL_6GZ4_1721/A2/4930:4933,
1/A2/4941:4944
Tandem non-canonical cWW pairs
homologous
IL_8C3A_135
NA
IL_6GZ4_1731/A2/4950:4952,
1/A2/5015:5017
Isolated non-canonical cWW pair
geometric
IL_4LFB_061
NA
IL_6GZ4_1741/A2/4954:4955,
1/A2/5011:5013
Single bulged U
homologous
IL_8C3A_137
NA
IL_6GZ4_1751/A2/4958:4960,
1/A2/5003:5008
Isolated non-canonical cWW pair
homologous
IL_5TBW_132
NA
IL_6GZ4_1761/A2/4961:4967,
1/A2/4997:5002
No text annotation
IL_6GZ4_1771/A2/4970:4972,
1/A2/4993:4994
Single bulged C
geometric
IL_4WF9_035
IL_61258.15
IL_6GZ4_1781/A2/4972:4975,
1/A2/4990:4993
Double sheared; A in syn
homologous
IL_8C3A_141
NA
IL_6GZ4_1791/A3/64:66,
1/A3/92:95
Decoding loop related
geometric
IL_3C3Z_002
IL_31737.3
IL_6GZ4_1801/A4/15:16,
1/A4/62:64
Single bulged A
homologous
IL_5TBW_372
NA
IL_6GZ4_1811/A4/21:27,
1/A4/52:57
Minor groove platform related
homologous
IL_5TBW_373
NA
IL_6GZ4_1821/A4/28:31,
1/A4/46:51
No text annotation
IL_6GZ4_1831/A4/32:36,
1/A4/41:45
Symmetric double minor groove platform
geometric
IL_7RQB_114
NA
IL_6GZ4_1841/A4/71:78,
1/A4/98:104
8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_6GZ4_1851/A4/79:81,
1/A4/95:97
Isolated non-canonical cWW pair
geometric
IL_4V88_470
NA
IL_6GZ4_1861/A4/82:85,
1/A4/92:94
Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_6GZ4_1871/B1/23:25,
1/B1/649:651
Isolated non-canonical cWW pair
geometric
IL_5J7L_259
IL_87907.2
IL_6GZ4_1881/B1/34:36,
1/B1/519:521
Isolated non-canonical cWW pair
homologous
IL_4V88_385
NA
IL_6GZ4_1891/B1/37:40,
1/B1/514:518
Double sheared
geometric
IL_4WF9_016
IL_09705.15
IL_6GZ4_1901/B1/41:47,
1/B1/479:481
No text annotation
homologous
IL_4V88_387
NA
IL_6GZ4_1911/B1/49:51,
1/B1/476:477
Minor groove platform
homologous
IL_4V88_388
NA
IL_6GZ4_1921/B1/63:68,
1/B1/81:85
No text annotation
homologous
IL_4V88_390
NA
IL_6GZ4_1931/B1/108:110,
1/B1/351:353
Isolated non-canonical cWW pair
geometric
IL_3SZX_003
IL_87907.2
IL_6GZ4_1941/B1/110:112,
1/B1/349:351
Isolated non-canonical cWW pair
geometric
IL_5TBW_378
NA
IL_6GZ4_1951/B1/112:115,
1/B1/348:349
Multiple bulged bases
geometric
IL_5WLH_001
IL_82107.5
IL_6GZ4_2861/B1/116:121,
1/B1/343:347
No text annotation
homologous
IL_8C3A_401
NA
IL_6GZ4_1971/B1/145:151,
1/B1/167:174
tWH-tWH-tHW-tHW
homologous
IL_4V88_394
NA
IL_6GZ4_1981/B1/152:155,
1/B1/163:166
Tandem non-canonical cWW pairs
geometric
IL_4V88_438
NA
IL_6GZ4_1991/B1/188:192,
1/B1/207:211
Double sheared with non-canonical cWW
geometric
IL_5J7L_274
IL_17948.2
IL_6GZ4_2001/B1/216:219,
1/B1/302:309
Tandem non-canonical cWW pairs
geometric
IL_1GID_008
NA
IL_6GZ4_2011/B1/312:314,
1/B1/336:337
Single bulged A
homologous
IL_4V88_399
NA
IL_6GZ4_2021/B1/317:319,
1/B1/332:333
No text annotation
IL_6GZ4_2031/B1/359:364,
1/B1/396:403
Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA
IL_6GZ4_2041/B1/366:371,
1/B1/393:394
No text annotation
geometric
IL_5Y58_001
IL_59877.1
IL_6GZ4_2051/B1/411:413,
1/B1/424:429
No text annotation
homologous
IL_4V88_404
NA
IL_6GZ4_2061/B1/437:439,
1/B1/454:456
Isolated cWH basepair
homologous
IL_4V88_405
NA
IL_6GZ4_2071/B1/459:461,
1/B1/468:470
Isolated near basepair
homologous
IL_4V88_406
NA
IL_6GZ4_2081/B1/491:495,
1/B1/508:509
C-loop
geometric
IL_5J7L_018
IL_03109.3
IL_6GZ4_2091/B1/495:497,
1/B1/505:508
Isolated cWH basepair
geometric
IL_3R1C_011
IL_10167.6
IL_6GZ4_2101/B1/530:531,
1/B1/553:555
Single bulged A
homologous
IL_4V88_409
NA
IL_6GZ4_2111/B1/535:537,
1/B1/546:549
Isolated non-canonical cWW pair
geometric
IL_4KYY_002
IL_07785.1
IL_6GZ4_2121/B1/566:569,
1/B1/581:584
Tandem non-canonical cWW pairs
geometric
IL_5C5W_003
NA
IL_6GZ4_2131/B1/599:606,
1/B1/636:637
SSU/LSU pseudoknot
geometric
IL_4V88_413
NA
IL_6GZ4_2141/B1/606:608,
1/B1/635:636
Single bulged U
geometric
IL_3D2V_001
IL_89505.4
IL_6GZ4_2151/B1/611:617,
1/B1/624:632
Kink-turn related
homologous
IL_4V88_415
NA
IL_6GZ4_2161/B1/663:665,
1/B1/1162:1164
Isolated non-canonical cWW pair
geometric
IL_1Y27_001
IL_87907.2
IL_6GZ4_2171/B1/665:671,
1/B1/1161:1162
No text annotation
homologous
IL_4V88_416
NA
IL_6GZ4_2181/B1/673:675,
1/B1/1030:1032
Isolated non-canonical cWW pair
homologous
IL_4V88_417
NA
IL_6GZ4_2191/B1/676:680,
1/B1/1025:1029
tSH-tHW-tHS
homologous
IL_4V88_418
NA
IL_6GZ4_2201/B1/747:749,
1/B1/794:795
No text annotation
IL_6GZ4_2211/B1/801:803,
1/B1/860:864
No text annotation
IL_6GZ4_2221/B1/805:807,
1/B1/856:858
Isolated non-canonical cWW pair
homologous
IL_4V88_424
NA
IL_6GZ4_2231/B1/807:815,
1/B1/849:856
No text annotation
homologous
IL_4V88_425
NA
IL_6GZ4_2241/B1/877:879,
1/B1/907:910
No text annotation
IL_6GZ4_2881/B1/877:881,
1/B1/905:910
No text annotation
IL_6GZ4_2251/B1/922:923,
1/B1/1019:1022
Major groove platform; stack outside cWW
homologous
IL_4V88_428
NA
IL_6GZ4_2261/B1/925:926,
1/B1/1015:1017
Single bulged U
geometric
IL_7KVT_002
IL_89505.4
IL_6GZ4_2271/B1/928:931,
1/B1/1010:1013
Tandem non-canonical cWW pairs
homologous
IL_4V88_430
NA
IL_6GZ4_2281/B1/931:935,
1/B1/1007:1010
Tandem non-canonical cWW pairs
geometric
IL_4V88_431
NA
IL_6GZ4_2291/B1/942:945,
1/B1/981:984
Tandem non-canonical cWW pairs
homologous
IL_4V88_432
NA
IL_6GZ4_2301/B1/952:956,
1/B1/967:974
Kink-turn
homologous
IL_4V88_434
NA
IL_6GZ4_2311/B1/1042:1047,
1/B1/1071:1073
Other IL
geometric
IL_4V88_435
NA
IL_6GZ4_2321/B1/1047:1051,
1/B1/1067:1071
tSH-tHW-tHS
homologous
IL_4V88_436
NA
IL_6GZ4_2331/B1/1091:1093,
1/B1/1152:1158
No text annotation
homologous
IL_4V88_437
NA
IL_6GZ4_2341/B1/1098:1101,
1/B1/1131:1134
Tandem non-canonical cWW pairs
geometric
IL_4V88_438
NA
IL_6GZ4_2351/B1/1101:1103,
1/B1/1129:1131
Isolated non-canonical cWW contact
geometric
IL_5UNE_001
IL_44465.1
IL_6GZ4_2361/B1/1108:1110,
1/B1/1123:1124
Single bulged U
homologous
IL_4V88_439
NA
IL_6GZ4_2371/B1/1168:1175,
1/B1/1186:1191
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4V88_440
NA
IL_6GZ4_2381/B1/1202:1204,
1/B1/1694:1697
Isolated non-canonical cWW pair
geometric
IL_4WF9_018
IL_07785.1
IL_6GZ4_2391/B1/1206:1208,
1/B1/1691:1692
Single bulged G
homologous
IL_4V88_442
NA
IL_6GZ4_2401/B1/1214:1217,
1/B1/1681:1685
C-loop
homologous
IL_4V88_443
NA
IL_6GZ4_2411/B1/1230:1232,
1/B1/1526:1528
Isolated non-canonical cWW pair
homologous
IL_4V88_444
NA
IL_6GZ4_2421/B1/1235:1236,
1/B1/1521:1523
Minor groove platform
homologous
IL_4V88_445
NA
IL_6GZ4_2431/B1/1270:1272,
1/B1/1510:1512
Isolated non-canonical cWW pair
homologous
IL_4V88_446
NA
IL_6GZ4_2441/B1/1281:1290,
1/B1/1309:1316
No text annotation
IL_6GZ4_2451/B1/1291:1293,
1/B1/1306:1308
No text annotation
homologous
IL_4V88_448
NA
IL_6GZ4_2461/B1/1325:1327,
1/B1/1502:1503
Single bulged U
homologous
IL_4V88_449
NA
IL_6GZ4_2471/B1/1329:1333,
1/B1/1498:1500
Isolated cWS basepair
homologous
IL_4V88_450
NA
IL_6GZ4_2891/B1/1329:1335,
1/B1/1492:1500
No text annotation
homologous
IL_8P9A_439
IL_86012.1
IL_6GZ4_2481/B1/1333:1335,
1/B1/1492:1498
Minor groove platform with extra cWW
geometric
IL_4V88_451
NA
IL_6GZ4_2491/B1/1337:1338,
1/B1/1488:1490
Single bulged A
homologous
IL_4V88_452
NA
IL_6GZ4_2501/B1/1347:1349,
1/B1/1380:1382
Isolated cWH basepair
homologous
IL_4V88_453
NA
IL_6GZ4_2511/B1/1363:1365,
1/B1/1374:1375
Minor groove platform
homologous
IL_4V88_454
NA
IL_6GZ4_2521/B1/1395:1399,
1/B1/1447:1450
Tandem non-canonical cWW pairs
geometric
IL_5J7L_283
IL_85033.2
IL_6GZ4_2531/B1/1402:1406,
1/B1/1440:1444
No text annotation
homologous
IL_8CRE_459
NA
IL_6GZ4_2541/B1/1408:1412,
1/B1/1425:1438
No text annotation
IL_6GZ4_2551/B1/1412:1415,
1/B1/1422:1425
Tandem non-canonical cWW pairs
geometric
IL_6CZR_168
NA
IL_6GZ4_2561/B1/1537:1539,
1/B1/1594:1596
Isolated non-canonical cWW pair
geometric
IL_3SZX_002
IL_87907.2
IL_6GZ4_2901/B1/1541:1550,
1/B1/1582:1592
No text annotation
IL_6GZ4_2571/B1/1550:1558,
1/B1/1577:1582
180 degree turn
geometric
IL_4LFB_052
IL_11344.2
IL_6GZ4_2581/B1/1560:1562,
1/B1/1573:1575
Isolated non-canonical cWW pair
geometric
IL_4E48_003
IL_87907.2
IL_6GZ4_2591/B1/1604:1610,
1/B1/1629:1635
No text annotation
homologous
IL_8C3A_469
NA
IL_6GZ4_2601/B1/1700:1702,
1/B1/1833:1836
No text annotation
homologous
IL_4V88_463
NA
IL_6GZ4_2611/B1/1702:1705,
1/B1/1829:1833
No text annotation
homologous
IL_8C3A_471
NA
IL_6GZ4_2621/B1/1706:1708,
1/B1/1826:1828
Isolated non-canonical cWW pair
homologous
IL_4V88_465
NA
IL_6GZ4_2631/B1/1708:1711,
1/B1/1822:1826
No text annotation
geometric
IL_1CSL_001
IL_25872.4
IL_6GZ4_2641/B1/1714:1716,
1/B1/1817:1819
Isolated non-canonical cWW pair
homologous
IL_4V88_467
NA
IL_6GZ4_2651/B1/1717:1720,
1/B1/1813:1816
Double sheared
homologous
IL_4V88_468
NA
IL_6GZ4_2661/B1/1720:1722,
1/B1/1812:1813
Single bulged U
geometric
IL_4V88_469
NA
IL_6GZ4_2671/B1/1729:1731,
1/B1/1803:1805
Isolated non-canonical cWW pair
homologous
IL_4V88_470
NA
IL_6GZ4_2681/B1/1733:1736,
1/B1/1798:1801
Double sheared
homologous
IL_4V88_471
NA
IL_6GZ4_2691/B1/1739:1741,
1/B1/1793:1795
Isolated non-canonical cWW pair
geometric
IL_4E48_002
IL_87907.2
IL_6GZ4_2701/B1/1742:1746,
1/B1/1788:1792
Triple sheared
homologous
IL_4V88_474
NA
IL_6GZ4_2711/B1/1750:1752,
1/B1/1780:1784
Isolated non-canonical cWW with bulges
geometric
IL_7A0S_112
IL_07785.1

Problematic loops

#loop idProblemSequence
IL_6GZ4_002Isolated non-canonical cWW pair
IL_6GZ4_273Tandem non-canonical cWW pairs
IL_6GZ4_026No text annotation
IL_6GZ4_049No text annotation
IL_6GZ4_050No text annotation
IL_6GZ4_058Triple sheared related
IL_6GZ4_282No text annotation
IL_6GZ4_164Isolated non-canonical cWW pair
IL_6GZ4_284No text annotation
IL_6GZ4_169No text annotation
IL_6GZ4_196No text annotation
IL_6GZ4_287No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6GZ4_0011/A2/112:118,
1/A2/151:158,
1/A2/269:272
No text annotation
J3_6GZ4_0311/A2/191:198,
1/A2/210:218,
1/A2/222:243
No text annotation
J3_6GZ4_0321/A2/345:361,
1/A2/368:373,
1/A3/21:24
No text annotation
homologous
J3_8P9A_045
J3_30040.2
J3_6GZ4_0331/A2/374:384,
1/A2/395:409,
1/A3/19:20
No text annotation
homologous
J3_8C3A_049
NA
J3_6GZ4_0021/A2/442:450,
1/A2/692:696,
1/A2/1275:1281
No text annotation
J3_6GZ4_0341/A2/442:453,
1/A2/689:696,
1/A2/1275:1281
No text annotation
J3_6GZ4_0351/A2/702:704,
1/A2/942:964,
1/A2/1260:1268
No text annotation
J3_6GZ4_0031/A2/1083:1087,
1/A2/1148:1150,
1/A2/1177:1178
No text annotation
J3_6GZ4_0041/A2/1513:1519,
1/A2/1604:1606,
1/A2/1622:1625
No text annotation
homologous
J3_8C3A_003
NA
J3_6GZ4_0051/A2/1527:1530,
1/A2/1562:1566,
1/A2/1591:1596
No text annotation
homologous
J3_5TBW_005
NA
J3_6GZ4_0361/A2/1708:1709,
1/A2/1784:1789,
1/A2/1813:1818
No text annotation
J3_6GZ4_0061/A2/1950:1952,
1/A2/1976:1982,
1/A2/1997:1999
No text annotation
homologous
J3_8C3A_005
NA
J3_6GZ4_0371/A2/1950:1952,
1/A2/1976:1986,
1/A2/1995:1999
No text annotation
J3_6GZ4_0071/A2/2372:2378,
1/A2/2784:2786,
1/A2/2798:2801
No text annotation
homologous
J3_5TBW_008
NA
J3_6GZ4_0081/A2/2381:2384,
1/A2/2764:2770,
1/A2/2779:2781
No text annotation
homologous
J3_8C3A_007
NA
J3_6GZ4_0091/A2/2419:2424,
1/A2/2494:2498,
1/A2/2515:2516
No text annotation
homologous
J3_5TBW_010
NA
J3_6GZ4_0381/A2/2430:2435,
1/A2/2444:2455,
1/A2/2480:2487
No text annotation
homologous
J3_8CRE_016
J3_65403.1
J3_6GZ4_0101/A2/2530:2534,
1/A2/2551:2554,
1/A2/2736:2746
No text annotation
J3_6GZ4_0111/A2/2554:2555,
1/A2/2564:2568,
1/A2/2735:2736
No text annotation
homologous
J3_8C3A_054
NA
J3_6GZ4_0391/A2/2577:2581,
1/A2/2716:2717,
1/A2/2721:2726
No text annotation
homologous
J3_8C3A_055
NA
J3_6GZ4_0121/A2/3908:3910,
1/A2/4044:4048,
1/A2/4130:4135
Kink-turn 3-way junction
geometric
J3_5J7L_044
J3_89368.5
J3_6GZ4_0131/A2/4061:4064,
1/A2/4083:4098,
1/A2/4117:4120
No text annotation
homologous
J3_8C3A_009
NA
J3_6GZ4_0401/A2/4061:4071,
1/A2/4077:4098,
1/A2/4117:4120
No text annotation
J3_6GZ4_0411/A2/4190:4192,
1/A2/4293:4304,
1/A2/4332:4337
No text annotation
homologous
J3_8C3A_056
NA
J3_6GZ4_0141/A2/4203:4205,
1/A2/4229:4231,
1/A2/4240:4245
No text annotation
homologous
J3_8C3A_010
NA
J3_6GZ4_0151/A2/4425:4428,
1/A2/4453:4455,
1/A2/4469:4475
No text annotation
homologous
J3_8C3A_011
NA
J3_6GZ4_0421/A2/4709:4733,
1/A2/4819:4841,
1/A2/4894:4910
No text annotation
J3_6GZ4_0161/A2/4928:4930,
1/A2/4944:4950,
1/A2/5017:5021
No text annotation
J3_6GZ4_0171/A3/44:45,
1/A3/58:64,
1/A3/95:99
No text annotation
homologous
J3_8C3A_060
NA
J3_6GZ4_0481/A4/9:14,
1/A4/65:66,
1/A4/109:110
No text annotation
homologous
J3_8P9A_066
J3_12003.2
J3_6GZ4_0191/B1/40:41,
1/B1/481:489,
1/B1/511:514
No text annotation
J3_6GZ4_0431/B1/40:47,
1/B1/479:489,
1/B1/511:514
No text annotation
J3_6GZ4_0441/B1/223:238,
1/B1/283:288,
1/B1/295:298
No text annotation
J3_6GZ4_0201/B1/682:685,
1/B1/917:922,
1/B1/1022:1023
No text annotation
J3_6GZ4_0451/B1/682:685,
1/B1/917:923,
1/B1/1019:1023
No text annotation
J3_6GZ4_0211/B1/816:819,
1/B1/829:831,
1/B1/843:848
No text annotation
homologous
J3_4V88_032
NA
J3_6GZ4_0221/B1/938:941,
1/B1/985:993,
1/B1/1000:1004
No text annotation
homologous
J3_4V88_033
NA
J3_6GZ4_0231/B1/1094:1096,
1/B1/1136:1140,
1/B1/1147:1151
No text annotation
J3_6GZ4_0241/B1/1218:1221,
1/B1/1645:1651,
1/B1/1673:1680
No text annotation
homologous
J3_4V88_035
NA
J3_6GZ4_0251/B1/1225:1228,
1/B1/1530:1532,
1/B1/1638:1641
No text annotation
homologous
J3_8C3A_039
NA
J3_6GZ4_0261/B1/1237:1244,
1/B1/1255:1266,
1/B1/1516:1520
No text annotation
homologous
J3_8P9A_078
J3_83516.4
J3_6GZ4_0461/B1/1272:1277,
1/B1/1320:1324,
1/B1/1504:1510
No text annotation
homologous
J3_8C3A_041
NA
J3_6GZ4_0281/B1/1340:1345,
1/B1/1384:1389,
1/B1/1481:1486
No text annotation
homologous
J3_8P9A_080
J3_99563.1
J3_6GZ4_0291/B1/1350:1351,
1/B1/1360:1363,
1/B1/1375:1379
No text annotation
homologous
J3_8C3A_085
NA
J3_6GZ4_0471/B1/1391:1395,
1/B1/1450:1456,
1/B1/1470:1479
No text annotation
J3_6GZ4_0301/B1/1532:1536,
1/B1/1597:1604,
1/B1/1635:1638
No text annotation
homologous
J3_8C3A_044
NA
J4_6GZ4_0011/A2/111:112,
1/A2/272:277,
1/A2/298:304,
1/A2/321:324
No text annotation
homologous
J4_8P9A_012
J4_45801.6
J4_6GZ4_0151/A2/965:970,
1/A2/1053:1058,
1/A2/1219:1228,
1/A2/1248:1259
No text annotation
J4_6GZ4_0031/A2/2344:2350,
1/A2/2368:2370,
1/A2/2803:2808,
1/A2/3827:3828
No text annotation
J4_6GZ4_0041/A2/2385:2389,
1/A2/2413:2418,
1/A2/2517:2518,
1/A2/2756:2763
No text annotation
J4_6GZ4_0051/A2/2388:2389,
1/A2/2413:2418,
1/A2/2517:2518,
1/A2/2756:2762
No text annotation
J4_6GZ4_0061/A2/2597:2598,
1/A2/2616:2621,
1/A2/2671:2677,
1/A2/2697:2698
No text annotation
J4_6GZ4_0071/A2/3605:3609,
1/A2/3621:3625,
1/A2/3661:3665,
1/A2/3792:3797
No text annotation
homologous
J4_8P9A_017
J4_07509.2
J4_6GZ4_0081/A2/3667:3669,
1/A2/3723:3725,
1/A2/3742:3751,
1/A2/3785:3790
No text annotation
J4_6GZ4_0091/A2/4193:4197,
1/A2/4251:4255,
1/A2/4279:4281,
1/A2/4290:4292
No text annotation
homologous
J4_8C3A_008
NA
J4_6GZ4_0101/A2/4549:4552,
1/A2/4582:4583,
1/A2/4638:4640,
1/A2/4674:4677
No text annotation
J4_6GZ4_0111/B1/98:106,
1/B1/355:357,
1/B1/405:409,
1/B1/431:432
No text annotation
homologous
J4_8C3A_021
NA
J4_6GZ4_0121/B1/671:673,
1/B1/1032:1037,
1/B1/1078:1089,
1/B1/1160:1161
No text annotation
homologous
J4_8C3A_022
NA
J4_6GZ4_0131/Bv/7:10,
1/Bv/25:27,
1/Bv/43:49,
1/Bv/65:66
tRNA junction
homologous
J4_6UFG_001
J4_70449.29
J4_6GZ4_0141/Bw/7:10,
1/Bw/25:27,
1/Bw/43:49,
1/Bw/65:66
tRNA junction
homologous
J4_4V9Q_031
J4_70449.29
J5_6GZ4_0101/A2/20:21,
1/A3/35:42,
1/A3/101:106,
1/A3/113:114,
1/A3/136:137
No text annotation
J5_6GZ4_0021/A2/1318:1323,
1/A2/1498:1501,
1/A2/1640:1643,
1/A2/2267:2269,
1/A2/2324:2330
No text annotation
J5_6GZ4_0031/A2/2834:2842,
1/A2/2866:2867,
1/A2/3584:3585,
1/A2/3589:3597,
1/A2/3806:3808
No text annotation
homologous
J5_8C3A_004
NA
J5_6GZ4_0041/A2/3874:3881,
1/A2/4354:4362,
1/A2/4406:4415,
1/A2/4490:4496,
1/A2/4514:4519
No text annotation
J5_6GZ4_0051/A2/3891:3894,
1/A2/4150:4153,
1/A2/4166:4167,
1/A2/4189:4190,
1/A2/4337:4343
No text annotation
homologous
J5_8C3A_006
NA
J5_6GZ4_0061/B1/30:34,
1/B1/521:527,
1/B1/558:565,
1/B1/585:595,
1/B1/641:644
No text annotation
J5_6GZ4_0071/B1/53:62,
1/B1/86:97,
1/B1/433:436,
1/B1/457:459,
1/B1/470:474
No text annotation
J5_6GZ4_0111/B1/123:144,
1/B1/175:186,
1/B1/213:216,
1/B1/309:314,
1/B1/336:341
No text annotation
J5_6GZ4_0091/B1/685:691,
1/B1/739:746,
1/B1/796:803,
1/B1/860:877,
1/B1/910:917
No text annotation
J6_6GZ4_0011/A2/21:26,
1/A2/57:67,
1/A2/74:78,
1/A2/105:109,
1/A2/326:336,
1/A3/32:35
No text annotation
J6_6GZ4_0021/A2/1335:1338,
1/A2/1367:1371,
1/A2/1378:1382,
1/A2/1401:1404,
1/A2/1446:1448,
1/A2/1481:1486
No text annotation
J6_6GZ4_0031/A2/3891:3894,
1/A2/4150:4153,
1/A2/4166:4167,
1/A2/4189:4192,
1/A2/4293:4304,
1/A2/4332:4343
No text annotation
J7_6GZ4_0011/A2/1648:1653,
1/A2/1666:1667,
1/A2/1833:1836,
1/A2/1860:1865,
1/A2/1876:1880,
1/A2/2058:2059,
1/A2/2257:2262
No text annotation

Problematic loops

#loop idProblemSequence
J3_6GZ4_018No text annotation
J3_6GZ4_027No text annotation
J4_6GZ4_002No text annotation
J5_6GZ4_001No text annotation
J5_6GZ4_008No text annotation

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