6GZ4 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6GZ4_001 | 1/A2/37:44 | No text annotation | homologous HL_5TBW_001 NA | |
| HL_6GZ4_002 | 1/A2/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_6GZ4_003 | 1/A2/89:95 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_6GZ4_005 | 1/A2/199:208 | No text annotation | geometric HL_2ZZM_002 NA | |
| HL_6GZ4_006 | 1/A2/218:222 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_6GZ4_007 | 1/A2/283:292 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_6GZ4_008 | 1/A2/308:317 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_6GZ4_009 | 1/A2/362:367 | GNRA | homologous HL_8C3A_010 NA | |
| HL_6GZ4_010 | 1/A2/387:392 | GNRA | homologous HL_8C3A_011 NA | |
| HL_6GZ4_014 | 1/A2/1161:1166 | No text annotation | geometric HL_2Y8W_001 NA | |
| HL_6GZ4_015 | 1/A2/1300:1309 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_014 NA | |
| HL_6GZ4_125 | 1/A2/1347:1356 | No text annotation | ||
| HL_6GZ4_017 | 1/A2/1372:1377 | GNRA | homologous HL_8C3A_016 NA | |
| HL_6GZ4_020 | 1/A2/1461:1468 | UNCG variation | geometric HL_6VMY_004 NA | |
| HL_6GZ4_021 | 1/A2/1543:1548 | GNRA | homologous HL_8C3A_019 NA | |
| HL_6GZ4_022 | 1/A2/1575:1584 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_6GZ4_023 | 1/A2/1609:1617 | No text annotation | homologous HL_5TBW_021 NA | |
| HL_6GZ4_024 | 1/A2/1657:1662 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_6GZ4_026 | 1/A2/1798:1805 | No text annotation | homologous HL_5TBW_024 NA | |
| HL_6GZ4_027 | 1/A2/1845:1851 | GNRA | homologous HL_8C3A_025 NA | |
| HL_6GZ4_028 | 1/A2/1867:1874 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_6GZ4_122 | 1/A2/1987:1994 | GNRA wlth tandem sheared | homologous HL_8P9A_140 HL_98423.1 | |
| HL_6GZ4_031 | 1/A2/2066:2250 | No text annotation | ||
| HL_6GZ4_032 | 1/A2/2296:2301 | GNRA | homologous HL_8C3A_030 NA | |
| HL_6GZ4_033 | 1/A2/2355:2363 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_6GZ4_034 | 1/A2/2399:2405 | Mini UNCG | geometric HL_4TUW_002 HL_12626.1 | |
| HL_6GZ4_035 | 1/A2/2437:2442 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_6GZ4_037 | 1/A2/2502:2511 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_6GZ4_039 | 1/A2/2557:2562 | GNRA | homologous HL_8C3A_036 NA | |
| HL_6GZ4_040 | 1/A2/2603:2611 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_6GZ4_041 | 1/A2/2643:2649 | No text annotation | homologous HL_8C3A_038 NA | |
| HL_6GZ4_042 | 1/A2/2683:2691 | No text annotation | ||
| HL_6GZ4_043 | 1/A2/2717:2721 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_6GZ4_044 | 1/A2/2771:2778 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_6GZ4_045 | 1/A2/2789:2795 | GNRA | homologous HL_8C3A_042 NA | |
| HL_6GZ4_046 | 1/A2/2851:2856 | UNCG | geometric HL_4PMI_004 NA | |
| HL_6GZ4_047 | 1/A2/3585:3589 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_6GZ4_048 | 1/A2/3610:3620 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_6GZ4_049 | 1/A2/3639:3645 | GNRA | homologous HL_8C3A_047 NA | |
| HL_6GZ4_050 | 1/A2/3695:3700 | GNRA | homologous HL_8C3A_048 NA | |
| HL_6GZ4_051 | 1/A2/3728:3738 | No text annotation | homologous HL_5TBW_049 NA | |
| HL_6GZ4_052 | 1/A2/3767:3775 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_6GZ4_053 | 1/A2/3844:3853 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_6GZ4_056 | 1/A2/4155:4163 | No text annotation | homologous HL_5TBW_054 NA | |
| HL_6GZ4_057 | 1/A2/4172:4184 | No text annotation | homologous HL_8C3A_056 NA | |
| HL_6GZ4_058 | 1/A2/4212:4220 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_6GZ4_059 | 1/A2/4232:4239 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_6GZ4_060 | 1/A2/4263:4271 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_6GZ4_061 | 1/A2/4283:4288 | GNRA | homologous HL_8C3A_060 NA | |
| HL_6GZ4_062 | 1/A2/4314:4324 | No text annotation | geometric HL_2ZZM_002 NA | |
| HL_6GZ4_063 | 1/A2/4379:4387 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_6GZ4_064 | 1/A2/4436:4443 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_6GZ4_065 | 1/A2/4459:4465 | No text annotation | homologous HL_5TBW_063 NA | |
| HL_6GZ4_066 | 1/A2/4502:4507 | GNRA | homologous HL_5TBW_064 NA | |
| HL_6GZ4_067 | 1/A2/4565:4570 | GNRA | homologous HL_5TBW_065 NA | |
| HL_6GZ4_068 | 1/A2/4608:4613 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_6GZ4_069 | 1/A2/4650:4664 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_6GZ4_070 | 1/A2/4865:4872 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_6GZ4_071 | 1/A2/4933:4941 | No text annotation | geometric HL_5TBW_070 NA | |
| HL_6GZ4_072 | 1/A2/4979:4986 | No text annotation | geometric HL_2Y8Y_001 NA | |
| HL_6GZ4_073 | 1/A3/47:56 | No text annotation | geometric HL_7RQB_001 NA | |
| HL_6GZ4_074 | 1/A3/68:90 | No text annotation | homologous HL_8C3A_075 NA | |
| HL_6GZ4_075 | 1/A3/107:112 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_6GZ4_076 | 1/A3/120:130 | No text annotation | ||
| HL_6GZ4_123 | 1/A4/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_6GZ4_077 | 1/A4/36:41 | No text annotation | homologous HL_5TBW_185 NA | |
| HL_6GZ4_078 | 1/A4/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_6GZ4_079 | 1/B1/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_6GZ4_081 | 1/B1/156:162 | GNRA related | homologous HL_4V88_188 NA | |
| HL_6GZ4_084 | 1/B1/288:295 | T-loop with 1 bulged base | homologous HL_4V88_191 NA | |
| HL_6GZ4_086 | 1/B1/377:387 | No text annotation | ||
| HL_6GZ4_087 | 1/B1/416:421 | No text annotation | homologous HL_4V88_194 NA | |
| HL_6GZ4_088 | 1/B1/441:452 | No text annotation | homologous HL_4V88_195 NA | |
| HL_6GZ4_089 | 1/B1/462:467 | UNCG | homologous HL_4V88_196 NA | |
| HL_6GZ4_090 | 1/B1/498:504 | No text annotation | homologous HL_4V88_197 NA | |
| HL_6GZ4_092 | 1/B1/569:581 | No text annotation | homologous HL_4V88_199 NA | |
| HL_6GZ4_093 | 1/B1/618:623 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_6GZ4_096 | 1/B1/820:828 | No text annotation | homologous HL_4V88_203 NA | |
| HL_6GZ4_097 | 1/B1/833:841 | No text annotation | homologous HL_8P9A_207 HL_89167.1 | |
| HL_6GZ4_099 | 1/B1/957:966 | No text annotation | homologous HL_4V88_206 NA | |
| HL_6GZ4_100 | 1/B1/994:999 | GNRA | homologous HL_4V88_207 NA | |
| HL_6GZ4_101 | 1/B1/1054:1064 | No text annotation | homologous HL_4V88_208 NA | |
| HL_6GZ4_102 | 1/B1/1112:1121 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_6GZ4_103 | 1/B1/1141:1146 | GNRA | homologous HL_4V88_210 NA | |
| HL_6GZ4_104 | 1/B1/1178:1183 | GNRA | homologous HL_4V88_211 NA | |
| HL_6GZ4_105 | 1/B1/1245:1254 | No text annotation | homologous HL_4V88_212 NA | |
| HL_6GZ4_106 | 1/B1/1295:1304 | Anticodon loop related | homologous HL_4V88_213 NA | |
| HL_6GZ4_107 | 1/B1/1353:1358 | GNRA | homologous HL_4V88_214 NA | |
| HL_6GZ4_108 | 1/B1/1366:1373 | No text annotation | homologous HL_4V88_215 NA | |
| HL_6GZ4_109 | 1/B1/1415:1422 | No text annotation | ||
| HL_6GZ4_110 | 1/B1/1460:1466 | GNRA | geometric HL_3NVI_002 NA | |
| HL_6GZ4_111 | 1/B1/1565:1570 | GNRA | homologous HL_4V88_218 NA | |
| HL_6GZ4_112 | 1/B1/1614:1625 | No text annotation | homologous HL_4V88_219 NA | |
| HL_6GZ4_113 | 1/B1/1658:1666 | No text annotation | homologous HL_4V88_220 NA | |
| HL_6GZ4_115 | 1/B1/1847:1852 | GNRA variation | homologous HL_4V88_222 NA | |
| HL_6GZ4_116 | 1/Bv/12:23 | No text annotation | homologous HL_1SER_001 NA | |
| HL_6GZ4_117 | 1/Bv/31:39 | tRNA anticodon loop | homologous HL_4TUE_034 NA | |
| HL_6GZ4_120 | 1/Bw/31:39 | tRNA anticodon loop | homologous HL_6CFJ_107 HL_81376.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6GZ4_004 | No text annotation | ||
| HL_6GZ4_011 | Externally structured | ||
| HL_6GZ4_012 | Externally structured | ||
| HL_6GZ4_013 | No text annotation | ||
| HL_6GZ4_016 | No text annotation | ||
| HL_6GZ4_018 | No text annotation | ||
| HL_6GZ4_126 | No text annotation | ||
| HL_6GZ4_019 | No text annotation | ||
| HL_6GZ4_025 | GNRA | ||
| HL_6GZ4_029 | No text annotation | ||
| HL_6GZ4_030 | No text annotation | ||
| HL_6GZ4_036 | Externally structured | ||
| HL_6GZ4_038 | GNRA | ||
| HL_6GZ4_054 | Mini UNCG | ||
| HL_6GZ4_055 | No text annotation | ||
| HL_6GZ4_080 | No text annotation | ||
| HL_6GZ4_124 | No text annotation | ||
| HL_6GZ4_082 | GNRA | ||
| HL_6GZ4_083 | No text annotation | ||
| HL_6GZ4_085 | No text annotation | ||
| HL_6GZ4_091 | No text annotation | ||
| HL_6GZ4_094 | No text annotation | ||
| HL_6GZ4_095 | Externally structured | ||
| HL_6GZ4_098 | Pseudoknot geometry | ||
| HL_6GZ4_114 | No text annotation | ||
| HL_6GZ4_118 | T-loop with 2 stacked bulged bases | ||
| HL_6GZ4_119 | No text annotation | ||
| HL_6GZ4_121 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6GZ4_001 | 1/A2/6:7, 1/A3/149:151 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_6GZ4_291 | 1/A2/12:14, 1/A3/143:144 | No text annotation | homologous IL_8CRE_003 NA | |
| IL_6GZ4_003 | 1/A2/16:18, 1/A3/139:141 | No text annotation | geometric IL_3ICQ_003 NA | |
| IL_6GZ4_004 | 1/A2/26:27, 1/A2/55:57 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_6GZ4_005 | 1/A2/30:37, 1/A2/44:52 | tSH-tHW-tHH-tHS | geometric IL_5TBW_005 NA | |
| IL_6GZ4_006 | 1/A2/81:88, 1/A2/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_6GZ4_007 | 1/A2/118:124, 1/A2/143:151 | No text annotation | ||
| IL_6GZ4_008 | 1/A2/127:129, 1/A2/139:140 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_6GZ4_010 | 1/A2/158:160, 1/A2/267:269 | Isolated non-canonical cWW pair | geometric IL_4LFB_061 NA | |
| IL_6GZ4_011 | 1/A2/161:164, 1/A2/263:266 | Tandem non-canonical cWW pairs | geometric IL_4WF9_109 NA | |
| IL_6GZ4_012 | 1/A2/165:167, 1/A2/261:262 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_6GZ4_272 | 1/A2/165:171, 1/A2/257:262 | No text annotation | ||
| IL_6GZ4_013 | 1/A2/167:171, 1/A2/257:261 | No text annotation | ||
| IL_6GZ4_017 | 1/A2/180:185, 1/A2/248:251 | No text annotation | ||
| IL_6GZ4_018 | 1/A2/186:188, 1/A2/246:247 | Single stack bend | geometric IL_4LFB_041 IL_15011.1 | |
| IL_6GZ4_019 | 1/A2/189:191, 1/A2/243:245 | No text annotation | geometric IL_8P9A_436 IL_38565.1 | |
| IL_6GZ4_020 | 1/A2/198:199, 1/A2/208:210 | Single stack bend | geometric IL_4V9F_081 IL_15011.1 | |
| IL_6GZ4_021 | 1/A2/342:344, 1/A3/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_6GZ4_022 | 1/A2/409:415, 1/A3/13:19 | Triple sheared with non-canonical cWW | homologous IL_8C3A_016 NA | |
| IL_6GZ4_023 | 1/A2/437:440, 1/A2/1283:1287 | No text annotation | geometric IL_6AZ4_001 NA | |
| IL_6GZ4_024 | 1/A2/450:453, 1/A2/689:692 | No text annotation | ||
| IL_6GZ4_292 | 1/A2/456:458, 1/A2/684:686 | Isolated non-canonical cWW pair | geometric IL_4YHW_001 NA | |
| IL_6GZ4_027 | 1/A2/461:466, 1/A2/676:681 | No text annotation | ||
| IL_6GZ4_274 | 1/A2/461:468, 1/A2/675:681 | No text annotation | ||
| IL_6GZ4_031 | 1/A2/470:472, 1/A2/670:671 | Not an internal loop | geometric IL_4UYK_002 NA | |
| IL_6GZ4_032 | 1/A2/472:475, 1/A2/667:670 | Tandem non-canonical cWW pairs | geometric IL_6CZR_168 NA | |
| IL_6GZ4_033 | 1/A2/475:481, 1/A2/663:667 | No text annotation | ||
| IL_6GZ4_034 | 1/A2/481:484, 1/A2/658:663 | No text annotation | ||
| IL_6GZ4_276 | 1/A2/481:485, 1/A2/656:663 | No text annotation | ||
| IL_6GZ4_040 | 1/A2/502:504, 1/A2/643:644 | Single bulged A | geometric IL_6WPI_001 IL_14190.1 | |
| IL_6GZ4_043 | 1/A2/699:700, 1/A2/1270:1272 | Single bulged G | geometric IL_4LFB_036 IL_28408.1 | |
| IL_6GZ4_044 | 1/A2/713:715, 1/A2/929:933 | No text annotation | ||
| IL_6GZ4_045 | 1/A2/717:726, 1/A2/915:927 | No text annotation | ||
| IL_6GZ4_046 | 1/A2/727:729, 1/A2/913:914 | No text annotation | ||
| IL_6GZ4_047 | 1/A2/731:733, 1/A2/909:911 | Isolated non-canonical cWW pair | geometric IL_4YHW_001 NA | |
| IL_6GZ4_048 | 1/A2/734:736, 1/A2/907:908 | Single stack bend | geometric IL_4C7O_002 NA | |
| IL_6GZ4_293 | 1/A2/736:743, 1/A2/898:907 | No text annotation | ||
| IL_6GZ4_051 | 1/A2/1065:1067, 1/A2/1195:1200 | No text annotation | ||
| IL_6GZ4_278 | 1/A2/1065:1068, 1/A2/1194:1200 | No text annotation | ||
| IL_6GZ4_052 | 1/A2/1068:1072, 1/A2/1189:1194 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_6GZ4_053 | 1/A2/1072:1074, 1/A2/1188:1189 | Single stack bend | geometric IL_4LFB_041 IL_15011.1 | |
| IL_6GZ4_054 | 1/A2/1075:1079, 1/A2/1182:1187 | No text annotation | ||
| IL_6GZ4_055 | 1/A2/1156:1158, 1/A2/1169:1171 | Isolated non-canonical cWW pair | geometric IL_4LFB_061 NA | |
| IL_6GZ4_056 | 1/A2/1340:1343, 1/A2/1362:1365 | No text annotation | ||
| IL_6GZ4_057 | 1/A2/1343:1344, 1/A2/1359:1362 | Multiple bulged bases | geometric IL_6JXM_001 NA | |
| IL_6GZ4_279 | 1/A2/1408:1411, 1/A2/1438:1442 | No text annotation | homologous IL_8C3A_025 NA | |
| IL_6GZ4_059 | 1/A2/1413:1417, 1/A2/1432:1436 | Double sheared with non-canonical cWW | geometric IL_4WFL_001 IL_87767.1 | |
| IL_6GZ4_060 | 1/A2/1449:1450, 1/A2/1478:1480 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_6GZ4_061 | 1/A2/1456:1458, 1/A2/1471:1472 | Single stack bend | geometric IL_7A0S_005 IL_15011.1 | |
| IL_6GZ4_062 | 1/A2/1502:1504, 1/A2/1637:1639 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_6GZ4_063 | 1/A2/1504:1508, 1/A2/1630:1637 | tHW-tHW cross-strand stack | geometric IL_5TBW_028 NA | |
| IL_6GZ4_064 | 1/A2/1532:1533, 1/A2/1558:1560 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_6GZ4_065 | 1/A2/1533:1537, 1/A2/1554:1558 | Triple sheared | geometric IL_4WF9_024 IL_15190.1 | |
| IL_6GZ4_066 | 1/A2/1568:1571, 1/A2/1587:1589 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_6GZ4_067 | 1/A2/1572:1574, 1/A2/1585:1586 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_6GZ4_068 | 1/A2/1606:1608, 1/A2/1618:1622 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_6GZ4_069 | 1/A2/1653:1655, 1/A2/1664:1666 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_6GZ4_070 | 1/A2/1668:1670, 1/A2/1829:1832 | No text annotation | ||
| IL_6GZ4_071 | 1/A2/1676:1703, 1/A2/1822:1823 | No text annotation | ||
| IL_6GZ4_072 | 1/A2/1705:1707, 1/A2/1819:1820 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_6GZ4_073 | 1/A2/1714:1719, 1/A2/1774:1779 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_6GZ4_074 | 1/A2/1719:1720, 1/A2/1772:1774 | Minor groove platform | homologous IL_8C3A_042 NA | |
| IL_6GZ4_075 | 1/A2/1721:1726, 1/A2/1768:1771 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_6GZ4_076 | 1/A2/1728:1731, 1/A2/1763:1766 | Tandem non-canonical cWW pairs | geometric IL_5TBW_041 NA | |
| IL_6GZ4_077 | 1/A2/1731:1733, 1/A2/1761:1763 | Isolated non-canonical cWW pair | homologous IL_8C3A_045 NA | |
| IL_6GZ4_078 | 1/A2/1735:1738, 1/A2/1757:1759 | Major groove platform with extra cWW | geometric IL_4V9F_003 IL_36931.1 | |
| IL_6GZ4_081 | 1/A2/1796:1798, 1/A2/1805:1806 | Single bulged G | geometric IL_4V88_442 NA | |
| IL_6GZ4_082 | 1/A2/1839:1841, 1/A2/1855:1857 | Isolated non-canonical cWW pair | homologous IL_5TBW_046 NA | |
| IL_6GZ4_083 | 1/A2/1886:1890, 1/A2/2048:2052 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_6GZ4_084 | 1/A2/1892:1899, 1/A2/2045:2046 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_6GZ4_085 | 1/A2/1899:1901, 1/A2/2044:2045 | No text annotation | ||
| IL_6GZ4_086 | 1/A2/1901:1903, 1/A2/2043:2044 | No text annotation | ||
| IL_6GZ4_087 | 1/A2/1907:1914, 1/A2/2034:2039 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_6GZ4_088 | 1/A2/1914:1925, 1/A2/2019:2034 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_6GZ4_089 | 1/A2/1927:1929, 1/A2/2016:2017 | Single bulged U | homologous IL_5TBW_053 NA | |
| IL_6GZ4_090 | 1/A2/1938:1946, 1/A2/2003:2007 | No text annotation | ||
| IL_6GZ4_091 | 1/A2/1954:1959, 1/A2/1969:1974 | No text annotation | ||
| IL_6GZ4_092 | 1/A2/1982:1986, 1/A2/1995:1997 | Major groove platform with extra cWW | homologous IL_8C3A_059 NA | |
| IL_6GZ4_093 | 1/A2/2064:2066, 1/A2/2250:2252 | No text annotation | geometric IL_3ICQ_003 NA | |
| IL_6GZ4_094 | 1/A2/2269:2271, 1/A2/2321:2324 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_6GZ4_095 | 1/A2/2278:2280, 1/A2/2313:2314 | Single bulged A | geometric IL_3OXE_001 IL_14190.1 | |
| IL_6GZ4_096 | 1/A2/2280:2282, 1/A2/2312:2313 | Single stack bend | geometric IL_7RQB_005 NA | |
| IL_6GZ4_097 | 1/A2/2282:2288, 1/A2/2308:2312 | No text annotation | ||
| IL_6GZ4_098 | 1/A2/2291:2293, 1/A2/2304:2305 | Single bulged A | geometric IL_5WWT_001 IL_14190.1 | |
| IL_6GZ4_099 | 1/A2/2337:2343, 1/A2/3829:3834 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_6GZ4_100 | 1/A2/2385:2388, 1/A2/2762:2763 | Major groove platform; stack outside cWW | geometric IL_7A0S_046 IL_74641.1 | |
| IL_6GZ4_101 | 1/A2/2394:2399, 1/A2/2405:2408 | No text annotation | ||
| IL_6GZ4_102 | 1/A2/2425:2429, 1/A2/2488:2493 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_6GZ4_103 | 1/A2/2456:2458, 1/A2/2478:2479 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_6GZ4_104 | 1/A2/2521:2526, 1/A2/2751:2753 | Isolated non-canonical cWW pair | geometric IL_3TD0_005 NA | |
| IL_6GZ4_105 | 1/A2/2528:2529, 1/A2/2747:2749 | Single bulged U | geometric IL_2R8S_004 IL_97561.1 | |
| IL_6GZ4_106 | 1/A2/2568:2572, 1/A2/2731:2735 | Triple sheared | homologous IL_5TBW_067 NA | |
| IL_6GZ4_107 | 1/A2/2592:2593, 1/A2/2703:2705 | Single bulged A | geometric IL_7A0S_012 IL_14190.1 | |
| IL_6GZ4_108 | 1/A2/2593:2594, 1/A2/2701:2703 | Single stack bend | homologous IL_8C3A_076 NA | |
| IL_6GZ4_109 | 1/A2/2625:2627, 1/A2/2664:2667 | Decoding loop related | geometric IL_2O3X_003 IL_61702.1 | |
| IL_6GZ4_110 | 1/A2/2630:2632, 1/A2/2660:2661 | Single bulged G | geometric IL_2IZN_001 IL_28408.1 | |
| IL_6GZ4_111 | 1/A2/2635:2641, 1/A2/2651:2657 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_6GZ4_112 | 1/A2/2811:2817, 1/A2/3821:3824 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_6GZ4_113 | 1/A2/2823:2825, 1/A2/3813:3815 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_6GZ4_114 | 1/A2/2826:2829, 1/A2/3811:3812 | Major groove platform; stack outside cWW | homologous IL_8C3A_082 NA | |
| IL_6GZ4_280 | 1/A2/2826:2834, 1/A2/3808:3812 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_6GZ4_115 | 1/A2/2829:2834, 1/A2/3808:3811 | Intercalated tWH | geometric IL_5TBW_077 NA | |
| IL_6GZ4_116 | 1/A2/2846:2851, 1/A2/2856:2862 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_6GZ4_117 | 1/A2/2868:2870, 1/A2/3581:3583 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_6GZ4_118 | 1/A2/2875:2876, 1/A2/3573:3576 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_6GZ4_120 | 1/A2/3603:3604, 1/A2/3798:3800 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_6GZ4_121 | 1/A2/3631:3636, 1/A2/3648:3655 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_6GZ4_122 | 1/A2/3671:3674, 1/A2/3720:3721 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_6GZ4_123 | 1/A2/3675:3676, 1/A2/3716:3719 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_6GZ4_124 | 1/A2/3679:3685, 1/A2/3710:3713 | No text annotation | ||
| IL_6GZ4_125 | 1/A2/3686:3692, 1/A2/3703:3709 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_6GZ4_126 | 1/A2/3725:3726, 1/A2/3740:3742 | Single stack bend | geometric IL_4WF9_007 IL_15011.1 | |
| IL_6GZ4_127 | 1/A2/3751:3752, 1/A2/3782:3785 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_6GZ4_128 | 1/A2/3752:3763, 1/A2/3779:3782 | No text annotation | geometric IL_5TBW_090 NA | |
| IL_6GZ4_129 | 1/A2/3866:3869, 1/A2/4525:4527 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_6GZ4_130 | 1/A2/3871:3873, 1/A2/4520:4523 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_6GZ4_131 | 1/A2/3884:3886, 1/A2/4350:4351 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_6GZ4_132 | 1/A2/3887:3888, 1/A2/4346:4349 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_6GZ4_133 | 1/A2/3898:3900, 1/A2/4143:4146 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_6GZ4_138 | 1/A2/4052:4058, 1/A2/4123:4126 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_6GZ4_142 | 1/A2/4153:4154, 1/A2/4164:4166 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_6GZ4_143 | 1/A2/4205:4207, 1/A2/4225:4229 | No text annotation | homologous IL_8C3A_108 NA | |
| IL_6GZ4_144 | 1/A2/4257:4260, 1/A2/4274:4277 | Tandem non-canonical cWW pairs | homologous IL_5TBW_100 NA | |
| IL_6GZ4_145 | 1/A2/4309:4312, 1/A2/4326:4327 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_6GZ4_146 | 1/A2/4362:4363, 1/A2/4404:4406 | Major groove platform | geometric IL_5TBW_102 NA | |
| IL_6GZ4_147 | 1/A2/4363:4365, 1/A2/4402:4404 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
| IL_6GZ4_148 | 1/A2/4365:4367, 1/A2/4401:4402 | Major groove platform | homologous IL_8C3A_112 NA | |
| IL_6GZ4_149 | 1/A2/4367:4369, 1/A2/4397:4401 | Major groove minor groove platform with extra cWW | homologous IL_8C3A_113 NA | |
| IL_6GZ4_150 | 1/A2/4374:4378, 1/A2/4388:4392 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_6GZ4_151 | 1/A2/4415:4416, 1/A2/4488:4490 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_6GZ4_152 | 1/A2/4418:4420, 1/A2/4482:4486 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_6GZ4_153 | 1/A2/4420:4421, 1/A2/4479:4482 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_6GZ4_154 | 1/A2/4428:4430, 1/A2/4451:4453 | No text annotation | geometric IL_4KR9_001 NA | |
| IL_6GZ4_281 | 1/A2/4428:4432, 1/A2/4447:4453 | No text annotation | ||
| IL_6GZ4_155 | 1/A2/4430:4432, 1/A2/4447:4451 | No text annotation | ||
| IL_6GZ4_156 | 1/A2/4457:4459, 1/A2/4465:4467 | Isolated non-canonical cWW pair | geometric IL_1RPU_001 NA | |
| IL_6GZ4_157 | 1/A2/4499:4500, 1/A2/4509:4511 | Single bulged A | geometric IL_7RQB_101 NA | |
| IL_6GZ4_158 | 1/A2/4542:4547, 1/A2/4679:4685 | No text annotation | ||
| IL_6GZ4_159 | 1/A2/4552:4554, 1/A2/4580:4582 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_6GZ4_160 | 1/A2/4558:4565, 1/A2/4570:4576 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_6GZ4_161 | 1/A2/4586:4591, 1/A2/4631:4635 | No text annotation | ||
| IL_6GZ4_162 | 1/A2/4594:4599, 1/A2/4624:4628 | UAA/GAN related | homologous IL_5TBW_118 NA | |
| IL_6GZ4_163 | 1/A2/4600:4602, 1/A2/4621:4623 | Not an internal loop | geometric IL_5VCI_005 NA | |
| IL_6GZ4_283 | 1/A2/4603:4604, 1/A2/4617:4620 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_6GZ4_165 | 1/A2/4642:4647, 1/A2/4667:4672 | UAA/GAN with extra cWW | geometric IL_5J7L_350 NA | |
| IL_6GZ4_166 | 1/A2/4701:4704, 1/A2/4916:4918 | No text annotation | ||
| IL_6GZ4_167 | 1/A2/4704:4708, 1/A2/4912:4916 | No text annotation | ||
| IL_6GZ4_294 | 1/A2/4705:4709, 1/A2/4910:4915 | No text annotation | ||
| IL_6GZ4_168 | 1/A2/4708:4709, 1/A2/4910:4912 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_6GZ4_285 | 1/A2/4843:4846, 1/A2/4889:4892 | Tandem non-canonical cWW pairs | geometric IL_8C3A_135 NA | |
| IL_6GZ4_170 | 1/A2/4849:4855, 1/A2/4881:4886 | No text annotation | ||
| IL_6GZ4_172 | 1/A2/4930:4933, 1/A2/4941:4944 | Tandem non-canonical cWW pairs | homologous IL_8C3A_135 NA | |
| IL_6GZ4_173 | 1/A2/4950:4952, 1/A2/5015:5017 | Isolated non-canonical cWW pair | geometric IL_4LFB_061 NA | |
| IL_6GZ4_174 | 1/A2/4954:4955, 1/A2/5011:5013 | Single bulged U | homologous IL_8C3A_137 NA | |
| IL_6GZ4_175 | 1/A2/4958:4960, 1/A2/5003:5008 | Isolated non-canonical cWW pair | homologous IL_5TBW_132 NA | |
| IL_6GZ4_176 | 1/A2/4961:4967, 1/A2/4997:5002 | No text annotation | ||
| IL_6GZ4_177 | 1/A2/4970:4972, 1/A2/4993:4994 | Single bulged C | geometric IL_4WF9_035 IL_05642.1 | |
| IL_6GZ4_178 | 1/A2/4972:4975, 1/A2/4990:4993 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_6GZ4_179 | 1/A3/64:66, 1/A3/92:95 | Decoding loop related | geometric IL_3C3Z_002 IL_29925.1 | |
| IL_6GZ4_180 | 1/A4/15:16, 1/A4/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_6GZ4_181 | 1/A4/21:27, 1/A4/52:57 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_6GZ4_182 | 1/A4/28:31, 1/A4/46:51 | No text annotation | ||
| IL_6GZ4_183 | 1/A4/32:36, 1/A4/41:45 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_6GZ4_184 | 1/A4/71:78, 1/A4/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_6GZ4_185 | 1/A4/79:81, 1/A4/95:97 | Isolated non-canonical cWW pair | geometric IL_4V88_470 NA | |
| IL_6GZ4_186 | 1/A4/82:85, 1/A4/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_6GZ4_187 | 1/B1/23:25, 1/B1/649:651 | Isolated non-canonical cWW pair | geometric IL_5J7L_259 NA | |
| IL_6GZ4_188 | 1/B1/34:36, 1/B1/519:521 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_6GZ4_189 | 1/B1/37:40, 1/B1/514:518 | Double sheared | geometric IL_4WF9_016 IL_58355.1 | |
| IL_6GZ4_190 | 1/B1/41:47, 1/B1/479:481 | No text annotation | homologous IL_4V88_387 NA | |
| IL_6GZ4_191 | 1/B1/49:51, 1/B1/476:477 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_6GZ4_192 | 1/B1/63:68, 1/B1/81:85 | No text annotation | homologous IL_4V88_390 NA | |
| IL_6GZ4_193 | 1/B1/108:110, 1/B1/351:353 | Isolated non-canonical cWW pair | geometric IL_3SZX_003 IL_01003.1 | |
| IL_6GZ4_194 | 1/B1/110:112, 1/B1/349:351 | Isolated non-canonical cWW pair | geometric IL_5TBW_378 NA | |
| IL_6GZ4_195 | 1/B1/112:115, 1/B1/348:349 | Multiple bulged bases | geometric IL_5WLH_001 NA | |
| IL_6GZ4_286 | 1/B1/116:121, 1/B1/343:347 | No text annotation | homologous IL_8C3A_401 NA | |
| IL_6GZ4_197 | 1/B1/145:151, 1/B1/167:174 | tWH-tWH-tHW-tHW | homologous IL_4V88_394 NA | |
| IL_6GZ4_198 | 1/B1/152:155, 1/B1/163:166 | Tandem non-canonical cWW pairs | geometric IL_4V88_438 NA | |
| IL_6GZ4_200 | 1/B1/216:219, 1/B1/302:309 | Tandem non-canonical cWW pairs | geometric IL_1GID_008 NA | |
| IL_6GZ4_203 | 1/B1/359:364, 1/B1/396:403 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_6GZ4_204 | 1/B1/366:371, 1/B1/393:394 | No text annotation | geometric IL_5Y58_001 IL_45649.1 | |
| IL_6GZ4_205 | 1/B1/411:413, 1/B1/424:429 | No text annotation | homologous IL_4V88_404 NA | |
| IL_6GZ4_206 | 1/B1/437:439, 1/B1/454:456 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_6GZ4_207 | 1/B1/459:461, 1/B1/468:470 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_6GZ4_208 | 1/B1/491:495, 1/B1/508:509 | C-loop | geometric IL_5J7L_018 NA | |
| IL_6GZ4_209 | 1/B1/495:497, 1/B1/505:508 | Isolated cWH basepair | geometric IL_3R1C_011 IL_10892.1 | |
| IL_6GZ4_212 | 1/B1/566:569, 1/B1/581:584 | Tandem non-canonical cWW pairs | geometric IL_5C5W_003 NA | |
| IL_6GZ4_213 | 1/B1/599:606, 1/B1/636:637 | SSU/LSU pseudoknot | geometric IL_4V88_413 NA | |
| IL_6GZ4_214 | 1/B1/606:608, 1/B1/635:636 | Single bulged U | geometric IL_3D2V_001 IL_97561.1 | |
| IL_6GZ4_215 | 1/B1/611:617, 1/B1/624:632 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_6GZ4_216 | 1/B1/663:665, 1/B1/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 NA | |
| IL_6GZ4_217 | 1/B1/665:671, 1/B1/1161:1162 | No text annotation | homologous IL_4V88_416 NA | |
| IL_6GZ4_218 | 1/B1/673:675, 1/B1/1030:1032 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_6GZ4_219 | 1/B1/676:680, 1/B1/1025:1029 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_6GZ4_221 | 1/B1/801:803, 1/B1/860:864 | No text annotation | ||
| IL_6GZ4_222 | 1/B1/805:807, 1/B1/856:858 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_6GZ4_223 | 1/B1/807:815, 1/B1/849:856 | No text annotation | homologous IL_4V88_425 NA | |
| IL_6GZ4_224 | 1/B1/877:879, 1/B1/907:910 | No text annotation | ||
| IL_6GZ4_288 | 1/B1/877:881, 1/B1/905:910 | No text annotation | ||
| IL_6GZ4_225 | 1/B1/922:923, 1/B1/1019:1022 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
| IL_6GZ4_226 | 1/B1/925:926, 1/B1/1015:1017 | Single bulged U | geometric IL_7KVT_002 IL_97561.1 | |
| IL_6GZ4_227 | 1/B1/928:931, 1/B1/1010:1013 | Tandem non-canonical cWW pairs | homologous IL_4V88_430 NA | |
| IL_6GZ4_228 | 1/B1/931:935, 1/B1/1007:1010 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_6GZ4_229 | 1/B1/942:945, 1/B1/981:984 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_6GZ4_230 | 1/B1/952:956, 1/B1/967:974 | Kink-turn | homologous IL_4V88_434 NA | |
| IL_6GZ4_231 | 1/B1/1042:1047, 1/B1/1071:1073 | Other IL | geometric IL_4V88_435 NA | |
| IL_6GZ4_232 | 1/B1/1047:1051, 1/B1/1067:1071 | tSH-tHW-tHS | homologous IL_4V88_436 NA | |
| IL_6GZ4_233 | 1/B1/1091:1093, 1/B1/1152:1158 | No text annotation | homologous IL_4V88_437 NA | |
| IL_6GZ4_234 | 1/B1/1098:1101, 1/B1/1131:1134 | Tandem non-canonical cWW pairs | geometric IL_4V88_438 NA | |
| IL_6GZ4_235 | 1/B1/1101:1103, 1/B1/1129:1131 | Isolated non-canonical cWW contact | geometric IL_5UNE_001 NA | |
| IL_6GZ4_236 | 1/B1/1108:1110, 1/B1/1123:1124 | Single bulged U | homologous IL_4V88_439 NA | |
| IL_6GZ4_237 | 1/B1/1168:1175, 1/B1/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_6GZ4_238 | 1/B1/1202:1204, 1/B1/1694:1697 | Isolated non-canonical cWW pair | geometric IL_4WF9_018 IL_71625.1 | |
| IL_6GZ4_239 | 1/B1/1206:1208, 1/B1/1691:1692 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_6GZ4_240 | 1/B1/1214:1217, 1/B1/1681:1685 | C-loop | homologous IL_4V88_443 NA | |
| IL_6GZ4_241 | 1/B1/1230:1232, 1/B1/1526:1528 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_6GZ4_242 | 1/B1/1235:1236, 1/B1/1521:1523 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_6GZ4_243 | 1/B1/1270:1272, 1/B1/1510:1512 | Isolated non-canonical cWW pair | homologous IL_4V88_446 NA | |
| IL_6GZ4_246 | 1/B1/1325:1327, 1/B1/1502:1503 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_6GZ4_247 | 1/B1/1329:1333, 1/B1/1498:1500 | Isolated cWS basepair | homologous IL_4V88_450 NA | |
| IL_6GZ4_289 | 1/B1/1329:1335, 1/B1/1492:1500 | No text annotation | homologous IL_8P9A_439 IL_99893.1 | |
| IL_6GZ4_248 | 1/B1/1333:1335, 1/B1/1492:1498 | Minor groove platform with extra cWW | geometric IL_4V88_451 NA | |
| IL_6GZ4_249 | 1/B1/1337:1338, 1/B1/1488:1490 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_6GZ4_250 | 1/B1/1347:1349, 1/B1/1380:1382 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_6GZ4_251 | 1/B1/1363:1365, 1/B1/1374:1375 | Minor groove platform | homologous IL_4V88_454 NA | |
| IL_6GZ4_252 | 1/B1/1395:1399, 1/B1/1447:1450 | Tandem non-canonical cWW pairs | geometric IL_5J7L_283 NA | |
| IL_6GZ4_253 | 1/B1/1402:1406, 1/B1/1440:1444 | No text annotation | homologous IL_8CRE_459 NA | |
| IL_6GZ4_254 | 1/B1/1408:1412, 1/B1/1425:1438 | No text annotation | ||
| IL_6GZ4_255 | 1/B1/1412:1415, 1/B1/1422:1425 | Tandem non-canonical cWW pairs | geometric IL_6CZR_168 NA | |
| IL_6GZ4_256 | 1/B1/1537:1539, 1/B1/1594:1596 | Isolated non-canonical cWW pair | geometric IL_3SZX_002 IL_01003.1 | |
| IL_6GZ4_290 | 1/B1/1541:1550, 1/B1/1582:1592 | No text annotation | ||
| IL_6GZ4_257 | 1/B1/1550:1558, 1/B1/1577:1582 | 180 degree turn | geometric IL_4LFB_052 IL_08849.1 | |
| IL_6GZ4_258 | 1/B1/1560:1562, 1/B1/1573:1575 | Isolated non-canonical cWW pair | geometric IL_4E48_003 IL_01003.1 | |
| IL_6GZ4_259 | 1/B1/1604:1610, 1/B1/1629:1635 | No text annotation | homologous IL_8C3A_469 NA | |
| IL_6GZ4_260 | 1/B1/1700:1702, 1/B1/1833:1836 | No text annotation | homologous IL_4V88_463 NA | |
| IL_6GZ4_261 | 1/B1/1702:1705, 1/B1/1829:1833 | No text annotation | homologous IL_8C3A_471 NA | |
| IL_6GZ4_262 | 1/B1/1706:1708, 1/B1/1826:1828 | Isolated non-canonical cWW pair | homologous IL_4V88_465 NA | |
| IL_6GZ4_263 | 1/B1/1708:1711, 1/B1/1822:1826 | No text annotation | geometric IL_1CSL_001 NA | |
| IL_6GZ4_264 | 1/B1/1714:1716, 1/B1/1817:1819 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_6GZ4_265 | 1/B1/1717:1720, 1/B1/1813:1816 | Double sheared | homologous IL_4V88_468 NA | |
| IL_6GZ4_266 | 1/B1/1720:1722, 1/B1/1812:1813 | Single bulged U | geometric IL_4V88_469 NA | |
| IL_6GZ4_267 | 1/B1/1729:1731, 1/B1/1803:1805 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_6GZ4_268 | 1/B1/1733:1736, 1/B1/1798:1801 | Double sheared | homologous IL_4V88_471 NA | |
| IL_6GZ4_269 | 1/B1/1739:1741, 1/B1/1793:1795 | Isolated non-canonical cWW pair | geometric IL_4E48_002 IL_01003.1 | |
| IL_6GZ4_270 | 1/B1/1742:1746, 1/B1/1788:1792 | Triple sheared | homologous IL_4V88_474 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6GZ4_002 | Isolated non-canonical cWW pair | ||
| IL_6GZ4_009 | No text annotation | ||
| IL_6GZ4_014 | Single stack bend | ||
| IL_6GZ4_015 | No text annotation | ||
| IL_6GZ4_016 | No text annotation | ||
| IL_6GZ4_025 | Isolated non-canonical cWW pair | ||
| IL_6GZ4_273 | Tandem non-canonical cWW pairs | ||
| IL_6GZ4_026 | No text annotation | ||
| IL_6GZ4_028 | Single stack bend | ||
| IL_6GZ4_029 | Single stack bend | ||
| IL_6GZ4_275 | No text annotation | ||
| IL_6GZ4_030 | Single stack bend | ||
| IL_6GZ4_035 | Single stack bend | ||
| IL_6GZ4_036 | No text annotation | ||
| IL_6GZ4_037 | Single stack bend | ||
| IL_6GZ4_038 | No text annotation | ||
| IL_6GZ4_039 | Single stack bend | ||
| IL_6GZ4_041 | Multiple bulged bases | ||
| IL_6GZ4_042 | Single stack bend | ||
| IL_6GZ4_049 | No text annotation | ||
| IL_6GZ4_050 | No text annotation | ||
| IL_6GZ4_277 | No text annotation | ||
| IL_6GZ4_058 | Triple sheared related | ||
| IL_6GZ4_079 | Single stack bend | ||
| IL_6GZ4_080 | Tandem non-canonical cWW pairs | ||
| IL_6GZ4_119 | No text annotation | ||
| IL_6GZ4_134 | No text annotation | ||
| IL_6GZ4_135 | Isolated non-canonical cWW pair | ||
| IL_6GZ4_136 | No text annotation | ||
| IL_6GZ4_137 | No text annotation | ||
| IL_6GZ4_139 | No text annotation | ||
| IL_6GZ4_140 | Isolated near basepair | ||
| IL_6GZ4_141 | Major groove platform with extra cWW | ||
| IL_6GZ4_282 | No text annotation | ||
| IL_6GZ4_164 | Isolated non-canonical cWW pair | ||
| IL_6GZ4_284 | No text annotation | ||
| IL_6GZ4_169 | No text annotation | ||
| IL_6GZ4_171 | No text annotation | ||
| IL_6GZ4_196 | No text annotation | ||
| IL_6GZ4_199 | Double sheared with non-canonical cWW | ||
| IL_6GZ4_201 | Single bulged A | ||
| IL_6GZ4_202 | No text annotation | ||
| IL_6GZ4_210 | Single bulged A | ||
| IL_6GZ4_287 | No text annotation | ||
| IL_6GZ4_211 | Isolated non-canonical cWW pair | ||
| IL_6GZ4_220 | No text annotation | ||
| IL_6GZ4_244 | No text annotation | ||
| IL_6GZ4_245 | No text annotation | ||
| IL_6GZ4_271 | Isolated non-canonical cWW with bulges |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6GZ4_001 | 1/A2/112:118, 1/A2/151:158, 1/A2/269:272 | No text annotation | ||
| J3_6GZ4_031 | 1/A2/191:198, 1/A2/210:218, 1/A2/222:243 | No text annotation | ||
| J3_6GZ4_032 | 1/A2/345:361, 1/A2/368:373, 1/A3/21:24 | No text annotation | homologous J3_8P9A_045 J3_07616.1 | |
| J3_6GZ4_033 | 1/A2/374:384, 1/A2/395:409, 1/A3/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_6GZ4_002 | 1/A2/442:450, 1/A2/692:696, 1/A2/1275:1281 | No text annotation | ||
| J3_6GZ4_034 | 1/A2/442:453, 1/A2/689:696, 1/A2/1275:1281 | No text annotation | ||
| J3_6GZ4_035 | 1/A2/702:704, 1/A2/942:964, 1/A2/1260:1268 | No text annotation | ||
| J3_6GZ4_004 | 1/A2/1513:1519, 1/A2/1604:1606, 1/A2/1622:1625 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_6GZ4_005 | 1/A2/1527:1530, 1/A2/1562:1566, 1/A2/1591:1596 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_6GZ4_036 | 1/A2/1708:1709, 1/A2/1784:1789, 1/A2/1813:1818 | No text annotation | ||
| J3_6GZ4_006 | 1/A2/1950:1952, 1/A2/1976:1982, 1/A2/1997:1999 | No text annotation | homologous J3_8C3A_005 NA | |
| J3_6GZ4_037 | 1/A2/1950:1952, 1/A2/1976:1986, 1/A2/1995:1999 | No text annotation | ||
| J3_6GZ4_007 | 1/A2/2372:2378, 1/A2/2784:2786, 1/A2/2798:2801 | No text annotation | homologous J3_5TBW_008 NA | |
| J3_6GZ4_008 | 1/A2/2381:2384, 1/A2/2764:2770, 1/A2/2779:2781 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_6GZ4_009 | 1/A2/2419:2424, 1/A2/2494:2498, 1/A2/2515:2516 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_6GZ4_038 | 1/A2/2430:2435, 1/A2/2444:2455, 1/A2/2480:2487 | No text annotation | homologous J3_8CRE_016 NA | |
| J3_6GZ4_010 | 1/A2/2530:2534, 1/A2/2551:2554, 1/A2/2736:2746 | No text annotation | ||
| J3_6GZ4_011 | 1/A2/2554:2555, 1/A2/2564:2568, 1/A2/2735:2736 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_6GZ4_039 | 1/A2/2577:2581, 1/A2/2716:2717, 1/A2/2721:2726 | No text annotation | homologous J3_8C3A_055 NA | |
| J3_6GZ4_012 | 1/A2/3908:3910, 1/A2/4044:4048, 1/A2/4130:4135 | Kink-turn 3-way junction | geometric J3_5J7L_044 NA | |
| J3_6GZ4_013 | 1/A2/4061:4064, 1/A2/4083:4098, 1/A2/4117:4120 | No text annotation | homologous J3_8C3A_009 NA | |
| J3_6GZ4_040 | 1/A2/4061:4071, 1/A2/4077:4098, 1/A2/4117:4120 | No text annotation | ||
| J3_6GZ4_041 | 1/A2/4190:4192, 1/A2/4293:4304, 1/A2/4332:4337 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_6GZ4_014 | 1/A2/4203:4205, 1/A2/4229:4231, 1/A2/4240:4245 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_6GZ4_015 | 1/A2/4425:4428, 1/A2/4453:4455, 1/A2/4469:4475 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_6GZ4_042 | 1/A2/4709:4733, 1/A2/4819:4841, 1/A2/4894:4910 | No text annotation | ||
| J3_6GZ4_016 | 1/A2/4928:4930, 1/A2/4944:4950, 1/A2/5017:5021 | No text annotation | ||
| J3_6GZ4_017 | 1/A3/44:45, 1/A3/58:64, 1/A3/95:99 | No text annotation | homologous J3_8C3A_060 NA | |
| J3_6GZ4_048 | 1/A4/9:14, 1/A4/65:66, 1/A4/109:110 | No text annotation | homologous J3_8P9A_066 J3_26985.1 | |
| J3_6GZ4_019 | 1/B1/40:41, 1/B1/481:489, 1/B1/511:514 | No text annotation | ||
| J3_6GZ4_043 | 1/B1/40:47, 1/B1/479:489, 1/B1/511:514 | No text annotation | ||
| J3_6GZ4_044 | 1/B1/223:238, 1/B1/283:288, 1/B1/295:298 | No text annotation | ||
| J3_6GZ4_020 | 1/B1/682:685, 1/B1/917:922, 1/B1/1022:1023 | No text annotation | ||
| J3_6GZ4_045 | 1/B1/682:685, 1/B1/917:923, 1/B1/1019:1023 | No text annotation | ||
| J3_6GZ4_021 | 1/B1/816:819, 1/B1/829:831, 1/B1/843:848 | No text annotation | homologous J3_4V88_032 NA | |
| J3_6GZ4_022 | 1/B1/938:941, 1/B1/985:993, 1/B1/1000:1004 | No text annotation | homologous J3_4V88_033 NA | |
| J3_6GZ4_023 | 1/B1/1094:1096, 1/B1/1136:1140, 1/B1/1147:1151 | No text annotation | ||
| J3_6GZ4_024 | 1/B1/1218:1221, 1/B1/1645:1651, 1/B1/1673:1680 | No text annotation | homologous J3_4V88_035 NA | |
| J3_6GZ4_025 | 1/B1/1225:1228, 1/B1/1530:1532, 1/B1/1638:1641 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_6GZ4_026 | 1/B1/1237:1244, 1/B1/1255:1266, 1/B1/1516:1520 | No text annotation | homologous J3_8P9A_078 J3_88451.1 | |
| J3_6GZ4_046 | 1/B1/1272:1277, 1/B1/1320:1324, 1/B1/1504:1510 | No text annotation | homologous J3_8C3A_041 NA | |
| J3_6GZ4_028 | 1/B1/1340:1345, 1/B1/1384:1389, 1/B1/1481:1486 | No text annotation | homologous J3_8P9A_080 J3_17077.1 | |
| J3_6GZ4_029 | 1/B1/1350:1351, 1/B1/1360:1363, 1/B1/1375:1379 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_6GZ4_047 | 1/B1/1391:1395, 1/B1/1450:1456, 1/B1/1470:1479 | No text annotation | ||
| J3_6GZ4_030 | 1/B1/1532:1536, 1/B1/1597:1604, 1/B1/1635:1638 | No text annotation | homologous J3_8C3A_044 NA | |
| J4_6GZ4_001 | 1/A2/111:112, 1/A2/272:277, 1/A2/298:304, 1/A2/321:324 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_6GZ4_015 | 1/A2/965:970, 1/A2/1053:1058, 1/A2/1219:1228, 1/A2/1248:1259 | No text annotation | ||
| J4_6GZ4_003 | 1/A2/2344:2350, 1/A2/2368:2370, 1/A2/2803:2808, 1/A2/3827:3828 | No text annotation | ||
| J4_6GZ4_004 | 1/A2/2385:2389, 1/A2/2413:2418, 1/A2/2517:2518, 1/A2/2756:2763 | No text annotation | ||
| J4_6GZ4_005 | 1/A2/2388:2389, 1/A2/2413:2418, 1/A2/2517:2518, 1/A2/2756:2762 | No text annotation | ||
| J4_6GZ4_006 | 1/A2/2597:2598, 1/A2/2616:2621, 1/A2/2671:2677, 1/A2/2697:2698 | No text annotation | ||
| J4_6GZ4_007 | 1/A2/3605:3609, 1/A2/3621:3625, 1/A2/3661:3665, 1/A2/3792:3797 | No text annotation | homologous J4_8P9A_017 J4_78485.1 | |
| J4_6GZ4_008 | 1/A2/3667:3669, 1/A2/3723:3725, 1/A2/3742:3751, 1/A2/3785:3790 | No text annotation | ||
| J4_6GZ4_009 | 1/A2/4193:4197, 1/A2/4251:4255, 1/A2/4279:4281, 1/A2/4290:4292 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_6GZ4_010 | 1/A2/4549:4552, 1/A2/4582:4583, 1/A2/4638:4640, 1/A2/4674:4677 | No text annotation | ||
| J4_6GZ4_011 | 1/B1/98:106, 1/B1/355:357, 1/B1/405:409, 1/B1/431:432 | No text annotation | homologous J4_8C3A_021 NA | |
| J4_6GZ4_012 | 1/B1/671:673, 1/B1/1032:1037, 1/B1/1078:1089, 1/B1/1160:1161 | No text annotation | homologous J4_8C3A_022 NA | |
| J4_6GZ4_013 | 1/Bv/7:10, 1/Bv/25:27, 1/Bv/43:49, 1/Bv/65:66 | tRNA junction | homologous J4_6UFG_001 NA | |
| J4_6GZ4_014 | 1/Bw/7:10, 1/Bw/25:27, 1/Bw/43:49, 1/Bw/65:66 | tRNA junction | homologous J4_4V9Q_031 J4_58311.1 | |
| J5_6GZ4_010 | 1/A2/20:21, 1/A3/35:42, 1/A3/101:106, 1/A3/113:114, 1/A3/136:137 | No text annotation | ||
| J5_6GZ4_002 | 1/A2/1318:1323, 1/A2/1498:1501, 1/A2/1640:1643, 1/A2/2267:2269, 1/A2/2324:2330 | No text annotation | ||
| J5_6GZ4_003 | 1/A2/2834:2842, 1/A2/2866:2867, 1/A2/3584:3585, 1/A2/3589:3597, 1/A2/3806:3808 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_6GZ4_004 | 1/A2/3874:3881, 1/A2/4354:4362, 1/A2/4406:4415, 1/A2/4490:4496, 1/A2/4514:4519 | No text annotation | ||
| J5_6GZ4_005 | 1/A2/3891:3894, 1/A2/4150:4153, 1/A2/4166:4167, 1/A2/4189:4190, 1/A2/4337:4343 | No text annotation | homologous J5_8C3A_006 NA | |
| J5_6GZ4_006 | 1/B1/30:34, 1/B1/521:527, 1/B1/558:565, 1/B1/585:595, 1/B1/641:644 | No text annotation | ||
| J5_6GZ4_007 | 1/B1/53:62, 1/B1/86:97, 1/B1/433:436, 1/B1/457:459, 1/B1/470:474 | No text annotation | ||
| J5_6GZ4_011 | 1/B1/123:144, 1/B1/175:186, 1/B1/213:216, 1/B1/309:314, 1/B1/336:341 | No text annotation | ||
| J5_6GZ4_009 | 1/B1/685:691, 1/B1/739:746, 1/B1/796:803, 1/B1/860:877, 1/B1/910:917 | No text annotation | ||
| J6_6GZ4_001 | 1/A2/21:26, 1/A2/57:67, 1/A2/74:78, 1/A2/105:109, 1/A2/326:336, 1/A3/32:35 | No text annotation | ||
| J6_6GZ4_002 | 1/A2/1335:1338, 1/A2/1367:1371, 1/A2/1378:1382, 1/A2/1401:1404, 1/A2/1446:1448, 1/A2/1481:1486 | No text annotation | ||
| J6_6GZ4_003 | 1/A2/3891:3894, 1/A2/4150:4153, 1/A2/4166:4167, 1/A2/4189:4192, 1/A2/4293:4304, 1/A2/4332:4343 | No text annotation | ||
| J7_6GZ4_001 | 1/A2/1648:1653, 1/A2/1666:1667, 1/A2/1833:1836, 1/A2/1860:1865, 1/A2/1876:1880, 1/A2/2058:2059, 1/A2/2257:2262 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6GZ4_003 | No text annotation | ||
| J3_6GZ4_018 | No text annotation | ||
| J3_6GZ4_027 | No text annotation | ||
| J4_6GZ4_002 | No text annotation | ||
| J5_6GZ4_001 | No text annotation | ||
| J5_6GZ4_008 | No text annotation |
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