HL_6GZ4_025

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAAACG

Length

7 nucleotides

Bulged bases

6GZ4|1|A2|G|1746, 6GZ4|1|A2|C|1750

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ4_025 not in the Motif Atlas

Homologous match to HL_5TBW_023

Geometric discrepancy: 0.5099

The information below is about HL_5TBW_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6GZ4|1|A2|C|1745
6GZ4|1|A2|G|1746
6GZ4|1|A2|A|1747
6GZ4|1|A2|A|1748
6GZ4|1|A2|A|1749
6GZ4|1|A2|C|1750
6GZ4|1|A2|G|1751

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AJ

ribosomal protein uL5

Chain B1

Small subunit ribosomal RNA; SSU rRNA

Chain BP

ribosomal protein uS19

Chain Bf

ribosomal protein eS31