HL_6GZ4_037

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

6GZ4|1|A2|U|2509, 6GZ4|1|A2|C|2510

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ4_037 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.2082

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6GZ4|1|A2|G|2502
6GZ4|1|A2|U|2503
6GZ4|1|A2|U|2504
6GZ4|1|A2|C|2505
6GZ4|1|A2|A|2506
6GZ4|1|A2|G|2507
6GZ4|1|A2|A|2508
6GZ4|1|A2|U|2509
6GZ4|1|A2|C|2510
6GZ4|1|A2|C|2511

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AR

ribosomal protein eL19

Chain AX

ribosomal protein uL23

Chain Ag

ribosomal protein eL34