HL_6GZ4_040

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

6GZ4|1|A2|U|2610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ4_040 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.2354

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6GZ4|1|A2|G|2603
6GZ4|1|A2|U|2604
6GZ4|1|A2|U|2605
6GZ4|1|A2|C|2606
6GZ4|1|A2|U|2607
6GZ4|1|A2|C|2608
6GZ4|1|A2|U|2609
6GZ4|1|A2|U|2610
6GZ4|1|A2|U|2611

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AR

ribosomal protein eL19

Chain AU

ribosomal protein eL22