HL_6GZ4_050

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ4_050 not in the Motif Atlas

Homologous match to HL_8C3A_048

Geometric discrepancy: 0.1427

The information below is about HL_8C3A_048

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6GZ4|1|A2|A|3695
6GZ4|1|A2|G|3696
6GZ4|1|A2|A|3697
6GZ4|1|A2|A|3698
6GZ4|1|A2|A|3699
6GZ4|1|A2|U|3700

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain Ai

ribosomal protein eL36

Chain Ao

ribosomal protein eL42

Chain Au

ribosomal protein uL1