HL_6GZ4_053

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6GZ4|1|A2|A|3847, 6GZ4|1|A2|A|3848, 6GZ4|1|A2|C|3849

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ4_053 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.1776

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6GZ4|1|A2|G|3844
6GZ4|1|A2|G|3845
6GZ4|1|A2|G|3846
6GZ4|1|A2|A|3847
6GZ4|1|A2|A|3848
6GZ4|1|A2|C|3849
6GZ4|1|A2|G|3850
6GZ4|1|A2|G|3851
6GZ4|1|A2|G|3852
6GZ4|1|A2|C|3853

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

ribosomal protein uL3

Chain AO

ribosomal protein uL13

Chain Ae

ribosomal protein eL32