HL_6GZ4_055

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCCCGGCC

Length

8 nucleotides

Bulged bases

6GZ4|1|A2|C|4107, 6GZ4|1|A2|G|4108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ4_055 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.2159

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6GZ4|1|A2|G|4104
6GZ4|1|A2|C|4105
6GZ4|1|A2|C|4106
6GZ4|1|A2|C|4107
6GZ4|1|A2|G|4108
6GZ4|1|A2|G|4109
6GZ4|1|A2|C|4110
6GZ4|1|A2|C|4111

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AZ

ribosomal protein eL27