HL_6GZ4_056

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6GZ4|1|A2|G|4157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ4_056 not in the Motif Atlas

Homologous match to HL_5TBW_054

Geometric discrepancy: 0.1595

The information below is about HL_5TBW_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6GZ4|1|A2|C|4155
6GZ4|1|A2|U|4156
6GZ4|1|A2|G|4157
6GZ4|1|A2|G|4158
6GZ4|1|A2|G|4159
6GZ4|1|A2|G|4160
6GZ4|1|A2|C|4161
6GZ4|1|A2|G|4162
6GZ4|1|A2|G|4163

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AI

ribosomal protein uL16

Chain Ab

ribosomal protein eL29

Chain Bv

Transfer RNA; tRNA