HL_6GZ4_058

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ4_058 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.1929

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6GZ4|1|A2|G|4212
6GZ4|1|A2|A|4213
6GZ4|1|A2|C|4214
6GZ4|1|A2|A|4215
6GZ4|1|A2|G|4216
6GZ4|1|A2|A|4217
6GZ4|1|A2|A|4218
6GZ4|1|A2|A|4219
6GZ4|1|A2|C|4220

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AJ

ribosomal protein uL5

Chain Bv

Transfer RNA; tRNA