HL_6GZ4_072

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

6GZ4|1|A2|C|4981, 6GZ4|1|A2|U|4984, 6GZ4|1|A2|C|4985

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ4_072 not in the Motif Atlas

Geometric match to HL_2Y8Y_001

Geometric discrepancy: 0.3659

The information below is about HL_2Y8Y_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6GZ4|1|A2|C|4979
6GZ4|1|A2|U|4980
6GZ4|1|A2|C|4981
6GZ4|1|A2|C|4982
6GZ4|1|A2|C|4983
6GZ4|1|A2|U|4984
6GZ4|1|A2|C|4985
6GZ4|1|A2|G|4986

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AU

ribosomal protein eL22

Chain BI

ribosomal protein eS8