HL_6GZ4_076

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGUUCCUCCC

Length

11 nucleotides

Bulged bases

6GZ4|1|A3|U|123, 6GZ4|1|A3|U|124, 6GZ4|1|A3|C|128

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ4|1|A3|G|120
6GZ4|1|A3|G|121
6GZ4|1|A3|G|122
6GZ4|1|A3|U|123
6GZ4|1|A3|U|124
6GZ4|1|A3|C|125
6GZ4|1|A3|C|126
6GZ4|1|A3|U|127
6GZ4|1|A3|C|128
6GZ4|1|A3|C|129
6GZ4|1|A3|C|130

Current chains

Chain A3

5.8S ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain AX

ribosomal protein uL23