HL_6GZ4_097

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCCGAGCCG

Length

9 nucleotides

Bulged bases

6GZ4|1|B1|G|836, 6GZ4|1|B1|C|840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ4_097 not in the Motif Atlas

Homologous match to HL_8P9A_207

Geometric discrepancy: 0.5915

The information below is about HL_8P9A_207

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

6GZ4|1|B1|C|833
6GZ4|1|B1|C|834
6GZ4|1|B1|C|835
6GZ4|1|B1|G|836
6GZ4|1|B1|A|837
6GZ4|1|B1|G|838
6GZ4|1|B1|C|839
6GZ4|1|B1|C|840
6GZ4|1|B1|G|841

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BE

ribosomal protein eS4

Chain BY

ribosomal protein eS24