HL_6GZ4_116

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUAGUGGUUAUC

Length

12 nucleotides

Bulged bases

6GZ4|1|Bv|U|16, 6GZ4|1|Bv|G|17, 6GZ4|1|Bv|G|18, 6GZ4|1|Bv|U|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ4_116 not in the Motif Atlas

Homologous match to HL_1SER_001

Geometric discrepancy: 0.5901

The information below is about HL_1SER_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40252.3

Basepair signature

cWW-tSH-cWS-F

Number of instances in this motif group

5

Unit IDs

6GZ4|1|Bv|G|12
6GZ4|1|Bv|U|13
6GZ4|1|Bv|A|14
6GZ4|1|Bv|G|15
6GZ4|1|Bv|U|16
6GZ4|1|Bv|G|17
6GZ4|1|Bv|G|18
6GZ4|1|Bv|U|19
6GZ4|1|Bv|U|20
6GZ4|1|Bv|A|21
6GZ4|1|Bv|U|22
6GZ4|1|Bv|C|23

Current chains

Chain Bv

ap/P-site tRNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain AJ

ribosomal protein uL5

Chain Ao

ribosomal protein eL42