HL_6GZ4_117
3D structure
- PDB id
- 6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CCUAACACG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GZ4_117 not in the Motif Atlas
- Homologous match to HL_4TUE_034
- Geometric discrepancy: 0.1464
- The information below is about HL_4TUE_034
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
6GZ4|1|Bv|C|31
6GZ4|1|Bv|C|32
6GZ4|1|Bv|U|33
6GZ4|1|Bv|A|34
6GZ4|1|Bv|A|35
6GZ4|1|Bv|C|36
6GZ4|1|Bv|A|37
6GZ4|1|Bv|C|38
6GZ4|1|Bv|G|39
Current chains
- Chain Bv
- ap/P-site tRNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain B1
- Small subunit ribosomal RNA; SSU rRNA
- Chain BQ
- ribosomal protein uS9
- Chain Bf
- ribosomal protein eS31
- Chain Bw
- Transfer RNA; tRNA
- Chain Bx
- mRNA
- Chain Ct
- eukaryotic elongation factor 2 (eEF2)
Coloring options: