HL_6GZ4_122

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ4_122 not in the Motif Atlas

Homologous match to HL_8P9A_140

Geometric discrepancy: 0.3091

The information below is about HL_8P9A_140

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.1

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

6GZ4|1|A2|U|1987
6GZ4|1|A2|G|1988
6GZ4|1|A2|U|1989
6GZ4|1|A2|A|1990
6GZ4|1|A2|A|1991
6GZ4|1|A2|C|1992
6GZ4|1|A2|A|1993
6GZ4|1|A2|A|1994

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AK

ribosomal protein uL10

Chain Am

ribosomal protein eL40

Chain Aq

ribosomal protein uL11

Chain Ct

eukaryotic elongation factor 2 (eEF2)