HL_6GZ5_015

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

6GZ5|1|A2|C|1308

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ5_015 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.1589

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6GZ5|1|A2|U|1300
6GZ5|1|A2|C|1301
6GZ5|1|A2|U|1302
6GZ5|1|A2|U|1303
6GZ5|1|A2|G|1304
6GZ5|1|A2|A|1305
6GZ5|1|A2|A|1306
6GZ5|1|A2|A|1307
6GZ5|1|A2|C|1308
6GZ5|1|A2|A|1309

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

ribosomal protein uL3

Chain Aa

ribosomal protein uL15

Chain Ae

ribosomal protein eL32