HL_6GZ5_021
3D structure
- PDB id
- 6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGAAAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GZ5_021 not in the Motif Atlas
- Homologous match to HL_8C3A_019
- Geometric discrepancy: 0.1284
- The information below is about HL_8C3A_019
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
6GZ5|1|A2|G|1543
6GZ5|1|A2|G|1544
6GZ5|1|A2|A|1545
6GZ5|1|A2|A|1546
6GZ5|1|A2|A|1547
6GZ5|1|A2|C|1548
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain Ap
- ribosomal protein eL43
- Chain B1
- Small subunit ribosomal RNA; SSU rRNA
- Chain BL
- ribosomal protein uS17
- Chain BN
- ribosomal protein uS15
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