HL_6GZ5_034

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

6GZ5|1|A2|G|2400, 6GZ5|1|A2|U|2404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ5_034 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.3526

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6GZ5|1|A2|A|2399
6GZ5|1|A2|G|2400
6GZ5|1|A2|C|2401
6GZ5|1|A2|A|2402
6GZ5|1|A2|G|2403
6GZ5|1|A2|U|2404
6GZ5|1|A2|U|2405

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AP

ribosomal protein uL22

Chain AR

ribosomal protein eL19