HL_6GZ5_056

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCCCGGCC

Length

8 nucleotides

Bulged bases

6GZ5|1|A2|C|4107, 6GZ5|1|A2|G|4108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ5_056 not in the Motif Atlas

Geometric match to HL_5TBW_018

Geometric discrepancy: 0.3802

The information below is about HL_5TBW_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

6GZ5|1|A2|G|4104
6GZ5|1|A2|C|4105
6GZ5|1|A2|C|4106
6GZ5|1|A2|C|4107
6GZ5|1|A2|G|4108
6GZ5|1|A2|G|4109
6GZ5|1|A2|C|4110
6GZ5|1|A2|C|4111

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AZ

ribosomal protein eL27